Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 45.4 bits (106), Expect = 6e-10
 Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 13/171 (7%)

Query: 11  GDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWV 70
           GDQ A+ + L     H  A L SR      ++ D+VQ+  +  + A  +++       W+
Sbjct: 17  GDQKAF-NLLVVRYQHKVASLVSRYVPS-GDVPDVVQESFIKAYRALDSFRGDSAFYTWL 74

Query: 71  QAIARYKLADHLRSVSRRDARHDVLDDDAQLFA-------VSEVESAEASRDLTKL---- 119
             IA     ++L +  RR    DV   +A+ F        +S  E+   S +L ++    
Sbjct: 75  YRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRT 134

Query: 120 LKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           ++ LPE  R+ I   +L+GLS EE A +       V+  I R  +A+   +
Sbjct: 135 IESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185