Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 229 a.a., RNA polymerase sigma factor, sigma-70 family from Kangiella aquimarina DSM 16071

 Score = 53.9 bits (128), Expect = 2e-12
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 27  VRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVS 86
           +R FLR   SR  AE  ++ Q+   +V  A   YQ     T W+  +AR KL DH R   
Sbjct: 73  LRYFLRQVDSRATAE--ELFQETWQSVIKASDRYQASAKFTTWLYHMARNKLIDHYRKQG 130

Query: 87  RRDARHDVLDDDAQL----FAVSEVE----SAEASRDLTKLLKQLPERQRLPIVHVKLEG 138
           R +     LDD  +L     +V E E     A++ +     L QLP  QR  +V      
Sbjct: 131 RGEELS--LDDQVELQPAAHSVDEPEQQLNDAQSKQQYLWALAQLPPAQREVLVLKIESA 188

Query: 139 LSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGA 173
           ++V+E A+    ++ AVK  +   ++ L +LI  A
Sbjct: 189 MTVQEIAETIQDNAEAVKSRLRYAVQKLKQLISEA 223