Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 188 a.a., RNA polymerase subunit sigma-70 from Erwinia amylovora T8

 Score =  109 bits (273), Expect = 2e-29
 Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 11/179 (6%)

Query: 4   LLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQ 63
           L+ +   GD+ AY   L  +   +RAF+R ++ R  A +ED+VQ+ LLA+H  RHTY PQ
Sbjct: 14  LMARAQAGDRKAYNSLLKAMVPAIRAFVRKKI-RNEALVEDVVQETLLAIHRVRHTYDPQ 72

Query: 64  QPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDA---QLFAVSEVESA--EASRDLTK 118
           +P+  WV AI+  +  D LR   R   R +V DDDA   QL    + ESA  E S  L+ 
Sbjct: 73  RPILPWVAAISSARAIDALRQTGR---RQEVQDDDALLNQLADADDFESAEREKSEALSG 129

Query: 119 LLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGANNHE 177
            L  LP RQR  +  V L   S+ + A    LS SAVK  +HR ++ L +   G  NHE
Sbjct: 130 CLDSLPLRQREMVEMVHLRQQSLVQAAAQCNLSVSAVKALLHRAMRNLRQY--GKGNHE 186