Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 200 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 49.7 bits (117), Expect = 3e-11
 Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 8/133 (6%)

Query: 42  IEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDD---- 97
           ++D +QDV   + + R      + + A++ A  R +L + L++  RR+  ++V D+    
Sbjct: 48  VKDTIQDVFCQLIDDRKKLGKARSVRAYLMACLRRRLLEALKN-ERRNRDYEVNDEAFFI 106

Query: 98  --DAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSS-A 154
             DA  + +    S +  + L K   +LP RQR  I+    E +  EE A++ GL+++  
Sbjct: 107 AVDANSYFIDSNLSLDQKKVLEKYCNELPVRQREIIMMRFFENMPYEEIAEVMGLANAKT 166

Query: 155 VKVGIHRGLKALS 167
           V+  ++RGL  LS
Sbjct: 167 VRTMMYRGLNKLS 179