Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 162 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 48.1 bits (113), Expect = 7e-11
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 41  EIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQ 100
           E ED VQ+ L    + R   Q  +  T W+  + + +    LR   R+       +D+  
Sbjct: 29  EAEDAVQEALEKAWHQREVLQKMENPTGWMVKVVKNQSLQKLRE--RQKWVVIEAEDEIP 86

Query: 101 LFAVSEVESAEASRDLT-KLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGI 159
              V+E E    +  L  + L++LPE+Q+      ++EGL+ EE A+   +S   VKV +
Sbjct: 87  EVPVAETEEVSPAVKLVFRFLRELPEKQQEVFQLREVEGLTYEEIAEYMDISMDQVKVNM 146

Query: 160 HRGLKALSRLI 170
            R  K L   +
Sbjct: 147 FRARKKLQSFL 157