Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 203 a.a., sigma-70 family RNA polymerase sigma factor from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 72.4 bits (176), Expect = 5e-18
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 10  TGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAW 69
           + D   ++  L  L  H+RAF R+ L+  P   +D+ QD ++   +AR +YQ    + AW
Sbjct: 14  SADDEGFKRELVLLIPHLRAFART-LTGDPTAADDLAQDAMMKAWDARASYQMGTNMKAW 72

Query: 70  VQAIARYKLADHLRSVSRRDARHDVLDDDA---QLFAVSEVESAEASRDLTKLLKQLPER 126
              I R    +   S  RR  R   LD +A    L AV + E+  A  +L + LK LPE 
Sbjct: 73  TFMILR----NQFYSEKRRSWRQSQLDQEAAERTLVAVDDPEAPVALDELRQALKTLPEE 128

Query: 127 QRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKAL 166
           QR  ++ V   G + EE A++ G +   VK  + R  +AL
Sbjct: 129 QREALILVGAGGFAYEEAAEICGCAVGTVKSRVSRARRAL 168