Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 186 a.a., sigma-70 family RNA polymerase sigma factor from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  136 bits (342), Expect = 2e-37
 Identities = 84/181 (46%), Positives = 106/181 (58%), Gaps = 5/181 (2%)

Query: 1   MKALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTY 60
           +KAL+L GL GD  A++  L  LA H+R F + RL    ++ ED+VQ+ L+A+H  R T+
Sbjct: 8   LKALMLNGLDGDAQAWRVLLSDLAAHLRPFFKRRLFNGESDAEDLVQETLIAIHAKRATW 67

Query: 61  QPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLL 120
              Q  TAW   IAR+KL DHLR   RR    + LDD + L A   VE     RDLT+ L
Sbjct: 68  DRNQSFTAWAFTIARHKLIDHLRRQGRR--LTEPLDDASVLLAEHTVEDGVMRRDLTRAL 125

Query: 121 KQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKAL-SRLIGGA--NNHE 177
             LP RQR  I  VK+ GLSV E A+  G S +A KV IHR  KAL +R   GA  +N E
Sbjct: 126 SILPARQRALIHDVKVTGLSVAEAAERHGYSVAAAKVSIHRSFKALTARFAAGAAGSNDE 185

Query: 178 D 178
           D
Sbjct: 186 D 186