Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 191 a.a., hypothetical protein from Bacteroides ovatus ATCC 8483

 Score = 53.9 bits (128), Expect = 2e-12
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 18/166 (10%)

Query: 27  VRAFLRSRLSRRPAEIEDMVQDVLLAVHNA-RHTYQPQQPLTAWVQAIARYKLADHLRSV 85
           ++AF+  R+S +  + ED++QDV   +  A  +T  P + +T+W+  + R  + +  +  
Sbjct: 22  LKAFIHRRVSSKE-DAEDILQDVFYQLVKAVSNTLNPIEQVTSWLYRVTRNTIINKGKKK 80

Query: 86  SRRD-------ARHDVLDDDAQ-LFAVSEVESAEAS--------RDLTKLLKQLPERQRL 129
           S  +           VL + ++ LFA  ++  +  +        ++L   L +LP  QR 
Sbjct: 81  SEEEWPVSAYAEEESVLSEFSEVLFANDDLAPSPETEYMRSLVWQELEAALGELPAEQRT 140

Query: 130 PIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGANN 175
               ++LEGLSV+E A+ TG S++ V    H  +K L + + G  N
Sbjct: 141 VFELMELEGLSVKEVAEATGASANTVLSRKHYAVKHLRKRLEGLYN 186