Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 191 a.a., RNA polymerase sigma E factor from Escherichia coli BL21

 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 13/171 (7%)

Query: 11  GDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWV 70
           GDQ A+ + L     H  A L SR      ++ D+VQ+  +  + A  +++       W+
Sbjct: 17  GDQKAF-NLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFYTWL 74

Query: 71  QAIARYKLADHLRSVSRRDARHDVLDDDAQLFA-------VSEVESAEASRDLTKL---- 119
             IA     ++L +  RR    DV   +A+ F        +S  E+   S +L ++    
Sbjct: 75  YRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRT 134

Query: 120 LKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           ++ LPE  R+ I   +L+GLS EE A +       V+  I R  +A+   +
Sbjct: 135 IESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185