Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 177 a.a., Sigma-K factor from Alteromonas macleodii MIT1002

 Score = 50.8 bits (120), Expect = 1e-11
 Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 4   LLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAV-HNARHTYQP 62
           LL +   GD+ A+ +     +  + A +  RL +RP   ++  QD  + + HNA +  + 
Sbjct: 9   LLCKTADGDKKAFAELYKITSPQLYA-VALRLLKRPELADEATQDAYIKIWHNAGNYQRG 67

Query: 63  QQPLTAWVQAIARYKLADHLRSVSRRDARHDV-LDDDAQLFAVSEVESAEASRDLTKLLK 121
           +  +  W+ +IARY+  D +R     + R++V L+DDA    +   +S +   +  KL  
Sbjct: 68  KGTVLTWMVSIARYRALDLIR---YHNVRNEVELNDDAP-SGMETTQSIKLEAEQAKLAS 123

Query: 122 QL-----PERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
            L     P+RQ + + +V   G+S +E           +K  I RGL++L R +
Sbjct: 124 CLDELDGPQRQAIHLAYV--NGMSHQEVVTHLASPLGTIKSWIRRGLQSLQRCL 175