Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 192 a.a., Sigma-24 from Alteromonas macleodii MIT1002

 Score = 56.2 bits (134), Expect = 3e-13
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 11  GDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWV 70
           GD+ A+ + L T   H    L SR  +   ++ D+ Q+  +  + A   ++       W+
Sbjct: 17  GDKNAF-NLLVTRYQHKVMHLVSRYVKNTGDVADVTQEAFIKAYRALPNFRGDSAFYTWL 75

Query: 71  QAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSE-----------VESAEASRDLTKL 119
             IA     ++L S  R+    DV  D+A  +  S+           + S E    L K+
Sbjct: 76  YRIAVNSAKNYLVSQGRKPPASDVDADEADFYEGSDALKEQSTPERSLLSEEIEETLFKV 135

Query: 120 LKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           +++LP+  R+ I   ++EGLS EE A +       V+  I R  +A+ ++I
Sbjct: 136 VEKLPDDLRMAITLREIEGLSYEEIANVMSCPVGTVRSRIFRAREAIDKVI 186