Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 200 a.a., RNA polymerase sigma factor CarQ from Alteromonas macleodii MIT1002

 Score = 43.5 bits (101), Expect = 2e-09
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 17/140 (12%)

Query: 43  EDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLF 102
           EDM Q   + V   RH ++      AW+  I R  L D      R++A+ +  ++  + F
Sbjct: 63  EDMCQRTWIKVIENRHLFKSGDNFQAWLFTIGRRTLIDEF----RKNAKLEFNNEAVESF 118

Query: 103 AVSE-VESAEAS----------RDLTK-LLKQLPERQRLPIVHVKLEGLSVEETAQLTGL 150
           ++SE +++A++S          +D+ K  ++QLP +Q+   + ++ EG S+ E A + G 
Sbjct: 119 SLSELLKNAQSSVEDDVAKGIEKDVFKACIQQLPYKQK-EALSLQFEGFSLAEIAAICGA 177

Query: 151 SSSAVKVGIHRGLKALSRLI 170
               +K  I     +L  ++
Sbjct: 178 EKETIKTRIRYAKDSLKTML 197