Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 188 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

 Score = 56.2 bits (134), Expect = 3e-13
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 10/156 (6%)

Query: 26  HVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSV 85
           ++RAF  S +  R    +D+VQD ++     + ++QP   + AW+  I R +    +R  
Sbjct: 22  NLRAFAISLIRSRD-RADDLVQDTIMKAWAKQDSFQPGTNMRAWLVTILRNEFYSQIRKS 80

Query: 86  SRRDARHDVLDDD----AQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSV 141
            R     +V D D    ++L    E   +   +D    L +LP+ QR  I+ +   G + 
Sbjct: 81  GR-----EVQDTDGVYTSRLSVPPEQHGSVDLQDFRTALAKLPDDQREAILLIGASGFAY 135

Query: 142 EETAQLTGLSSSAVKVGIHRGLKALSRLIGGANNHE 177
           EE A++ G     +K  + R    L  L+G  N +E
Sbjct: 136 EEAAEICGCPVGTIKSRVSRARLRLQELLGIENENE 171