Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 169 a.a., ECF family sigma factor from Agrobacterium fabrum C58

 Score =  119 bits (298), Expect = 3e-32
 Identities = 70/169 (41%), Positives = 101/169 (59%), Gaps = 3/169 (1%)

Query: 5   LLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRP-AEIEDMVQDVLLAVHNARHTYQPQ 63
           +L+ L GD+ +Y+  L  L   + A+   R++    A++ED+VQ+ LL++H  R TY   
Sbjct: 1   MLRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRA 60

Query: 64  QPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLLKQL 123
           +P TAW  +IARYKL DH R   RR      LD+  +  A S V++  A  D+ +LL +L
Sbjct: 61  RPFTAWFFSIARYKLIDHYRGRGRRMFSEVELDETLE--AESSVDAVTARMDVERLLNEL 118

Query: 124 PERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGG 172
           PERQR  I  VKLEG S+ E A+ +G +  A +VGIHR LK L+  + G
Sbjct: 119 PERQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKVLAAKLRG 167