Pairwise Alignments

Query, 317 a.a., Ribosomal RNA large subunit methyltransferase F from Pseudomonas putida KT2440

Subject, 308 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score =  322 bits (826), Expect = 6e-93
 Identities = 161/308 (52%), Positives = 211/308 (68%), Gaps = 8/308 (2%)

Query: 1   MTPNKPTLHPRNRHQGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALL 60
           M+  KP LHPRNRH  RYD  +L + +P+L +F    P G+ S+DFANP AV+  N+ALL
Sbjct: 1   MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALL 60

Query: 61  KAQYGIQHWDIPADYLCPPIPGRADYIHVAADLLADDNAGDVPRGAQVRALDIGVGANCI 120
              Y + +WDIP  +LCPP+PGRADYIH  ADLLA + +G +P  A +  LDIGVGANCI
Sbjct: 61  AHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLA-EASGTIPANASI--LDIGVGANCI 117

Query: 121 YPLLGYSDYRWRFLGSDIDPVALASAKAIVQAN-GLGKAITLRQQANRAHILSGLLQEGE 179
           YPL+G  +Y WRF GS+    AL+SA+AI+ +N GL +AI LR+Q     I +G++ + E
Sbjct: 118 YPLIGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLRRQKESGAIFNGIIHKNE 177

Query: 180 RFDLTLCNPPFHASRDEATRGSQRKWKNLGKQDPKRKLPVLNFGGQNNELWCEGGEIRFV 239
           ++D TLCNPPFH S   A  GS+RK +NLG      K   LNFGGQ  ELWCEGGE+ F+
Sbjct: 178 QYDATLCNPPFHDSAAAARAGSERKRRNLG----LNKDDALNFGGQQQELWCEGGEVTFI 233

Query: 240 TQLIGESVQYAERVLWFTSLVSKASNLPGIEAALKKSGAKAVRIIEMGQGQKQSRMVAWS 299
            ++I ES  +A++V+WFTSLVS+  NLP +  AL   GA  V   EM QGQKQSR +AW+
Sbjct: 234 KKMIEESKGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWT 293

Query: 300 FLDDAARQ 307
           F++D  R+
Sbjct: 294 FMNDEQRR 301