Pairwise Alignments

Query, 241 a.a., lipopolysaccharide ABC transporter, subunit LptB from Pseudomonas putida KT2440

Subject, 239 a.a., Lipopolysaccharide export system ATP-binding protein LptB from Xanthobacter sp. DMC5

 Score =  133 bits (335), Expect = 3e-36
 Identities = 78/239 (32%), Positives = 136/239 (56%), Gaps = 5/239 (2%)

Query: 1   MATLKAQHLAKSYKGRQVVRDVSLSIDSGQIVGLLGPNGAGKTTCFYMIVGLVQAEQGRV 60
           ++ L  + +   Y+GR V++ VSL + +   + ++GPNG+GK+T    +VGLV  ++GR+
Sbjct: 1   VSALVLEGVFAGYRGRPVLQGVSLEVVAHGSLTVVGPNGSGKSTLMKAVVGLVLPDKGRI 60

Query: 61  LIDNLDVSHQPMHGRARAGIGYLPQEASIFRKLSVADNIMAILETRKDLDRDGRRKELES 120
           L++  D++     GRAR G+G++PQEA++FR L+VA+N+    E           + LE+
Sbjct: 61  LLEGEDITRLDPPGRARRGLGHVPQEANVFRSLTVAENLRLSFEFIPSRSGASFARRLEA 120

Query: 121 LLQEFHISHIRDNLGMS---LSGGERRRVEIARALATAPKFILLDEPFAGVDPISVGDIK 177
           +L  F    I   L ++   LSGG+R+ V +  AL   P  + LDEP AG+ P +   + 
Sbjct: 121 VLALF--PEIEPKLKVAAGLLSGGQRQMVAMGAALMPEPSVLALDEPSAGLSPRNAELLF 178

Query: 178 QIIHHLKAKGIGVLITDHNVRETLDICETAYIVNDGRLIAEGDAETILANELVKEVYLG 236
             I  +   G+ +L+ + N R  L I +   ++  G++ A   A  +LA+ L++++YLG
Sbjct: 179 TAIARIAKAGVTLLLIEQNTRLGLSIADEGLVLVAGQVKARAPAAELLADGLMQKLYLG 237