Pairwise Alignments

Query, 241 a.a., lipopolysaccharide ABC transporter, subunit LptB from Pseudomonas putida KT2440

Subject, 239 a.a., ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  133 bits (334), Expect = 4e-36
 Identities = 80/239 (33%), Positives = 133/239 (55%), Gaps = 2/239 (0%)

Query: 1   MATLKAQHLAKSYKGRQVVRDVSLSIDSGQIVGLLGPNGAGKTTCFYMIVGLVQAEQGRV 60
           MA L    ++KSY   +V  D++L++  G+ +G+LGPNGAGKTT F +I G V+ + GRV
Sbjct: 1   MALLALHAVSKSYGALKVTDDITLAVAEGETLGILGPNGAGKTTLFNLISGDVRVDAGRV 60

Query: 61  LIDNLDVSHQPMHGRARAGIGYLPQEASIFRKLSVADNIM-AILETRKDLDRDGRRKELE 119
                DV+    H R  AGIG   Q    F  +SV +N++ A     +  +R+  +   E
Sbjct: 61  EYAGRDVTRLKPHQRCHAGIGRSYQVPQPFGNMSVFENLVTAACFGGQQTEREAWQTAHE 120

Query: 120 SLLQEFHISHIRDNLGMSLSGGERRRVEIARALATAPKFILLDEPFAGVDPISVGDIKQI 179
            L Q   ++H     G  L+  +R+R+E+ARALAT P+ +LLDE   G+       +   
Sbjct: 121 VLSQTGLMAHANKPAG-GLTLLDRKRLELARALATRPRLLLLDEIAGGLTEPEAAVLVAE 179

Query: 180 IHHLKAKGIGVLITDHNVRETLDICETAYIVNDGRLIAEGDAETILANELVKEVYLGHE 238
           +  +KA+G+ ++  +H V   L + +  +++N G+ +AEG+   ++ +  V+ VY+G E
Sbjct: 180 LKRIKARGVTMIWIEHVVHALLSLADRLFVINFGQRLAEGEPRVVMNDAEVRRVYMGME 238