Pairwise Alignments

Query, 241 a.a., lipopolysaccharide ABC transporter, subunit LptB from Pseudomonas putida KT2440

Subject, 236 a.a., Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  144 bits (362), Expect = 2e-39
 Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 2/234 (0%)

Query: 4   LKAQHLAKSYKGRQVVRDVSLSIDSGQIVGLLGPNGAGKTTCFYMIVGLVQAEQGRVLID 63
           LK + +  SY   + V+ VSL + +G++V ++G NGAGK+T    IVGL    +GRVLID
Sbjct: 2   LKIESVKVSYGAIEAVKGVSLEVRAGEVVTIIGANGAGKSTLLKSIVGLEPVAEGRVLID 61

Query: 64  NLDVSHQPMHGRARAGIGYLPQEASIFRKLSVADNIMAILETRKDLDRDGRRKELESLLQ 123
             D +H P H R   G+   P+   +F   +V +N+M    +R++ D+      +E    
Sbjct: 62  GNDCTHVPSHKRVGLGVALSPEGRGVFPDQTVRENLMLGAYSRRN-DKAFVENAIEREFA 120

Query: 124 EF-HISHIRDNLGMSLSGGERRRVEIARALATAPKFILLDEPFAGVDPISVGDIKQIIHH 182
            F  +   +     +LSGGE++ + IARAL + P+ +LLDEP  G+ P+ + DI   I  
Sbjct: 121 RFPRLKERQHQPSGTLSGGEQQMLAIARALMSEPRLLLLDEPSLGLAPLIIKDIFDAIRQ 180

Query: 183 LKAKGIGVLITDHNVRETLDICETAYIVNDGRLIAEGDAETILANELVKEVYLG 236
           L++ G+ +L+ +   ++ L + + AY++  G +  EG    +L N  VK  YLG
Sbjct: 181 LRSSGLTILLVEQMAKQALGVADRAYVLETGCITLEGSGRELLDNPKVKSAYLG 234