Pairwise Alignments

Query, 241 a.a., lipopolysaccharide ABC transporter, subunit LptB from Pseudomonas putida KT2440

Subject, 236 a.a., ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  134 bits (338), Expect = 1e-36
 Identities = 82/239 (34%), Positives = 133/239 (55%), Gaps = 10/239 (4%)

Query: 2   ATLKAQHLAKSYKGRQVVRDVSLSIDSGQIVGLLGPNGAGKTTCFYMIVGLVQAEQGRVL 61
           A L  Q L   Y   +V+R V L +D+G++V LLG NGAGK+T   M+ GL  A  G V 
Sbjct: 3   ALLDIQGLRGGYGRVEVLRGVDLRVDAGEMVALLGSNGAGKSTLNKMVCGLCPAWSGTVR 62

Query: 62  IDNLDVSHQPMHGRARAGIGYLPQEASIFRKLSVADNIMAILETRKDLDRDGRRKELESL 121
            D  D+S        +AG+  +P+   IF  LSV +N+     TR    R+ R   +E +
Sbjct: 63  FDGKDLSGAHYRDVVKAGLIQVPEGRKIFPNLSVLENLELGSFTRA---RERRAANVEKM 119

Query: 122 LQEFHI-SHIRDNLGM---SLSGGERRRVEIARALATAPKFILLDEPFAGVDPISVGDIK 177
              FHI   +R+ +G    ++SGGE++ + IAR L   P  ++LDEP  G+ P+ V ++ 
Sbjct: 120 ---FHIFPRLRERVGQHAGTMSGGEQQMLAIARGLMAEPVLLILDEPSLGLSPLLVEEMF 176

Query: 178 QIIHHLKAKGIGVLITDHNVRETLDICETAYIVNDGRLIAEGDAETILANELVKEVYLG 236
            +I  L+  G+ VL+ + NV ++L+I + AY++ +G +   G  + +L ++ ++  YLG
Sbjct: 177 SLIRELRDGGLAVLLVEQNVGQSLEIADRAYVLENGSVRFSGKPDALLGSDELRRAYLG 235