Pairwise Alignments

Query, 241 a.a., lipopolysaccharide ABC transporter, subunit LptB from Pseudomonas putida KT2440

Subject, 308 a.a., ABC transporter ATP-binding protein from Magnetospirillum magneticum AMB-1

 Score =  127 bits (320), Expect = 2e-34
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 2   ATLKAQHLAKSYKGRQVVRDVSLSIDSGQIVGLLGPNGAGKTTCFYMIVGLVQAEQGRVL 61
           A +  Q L K + GR VV+D S+ +  G+I G LGPNG+GKTT   M+ GL+  + GR  
Sbjct: 5   AAIDVQGLEKRFAGRAVVQDFSILVPRGRIFGFLGPNGSGKTTTIRMLCGLLTPDAGRGT 64

Query: 62  IDNLDVSHQPMHGRARAGIGYLPQEASIFRKLSVADNIMAILETRKDLDRDGRRKELESL 121
              LD+  Q    + R  +GY+ Q  S +  L++A+N+  +      LDR  R++ ++  
Sbjct: 65  CLGLDILRQSDEIKRR--VGYMTQRFSFYEDLTIAENLDFVARVY-GLDR--RKQRVDEA 119

Query: 122 LQEFHISHIRDNLGMSLSGGERRRVEIARALATAPKFILLDEPFAGVDPISVGDIKQIIH 181
           L +  ++  R  L  +LSGG ++R+ +A  +   P+ +LLDEP AGVDP +  D    IH
Sbjct: 120 LADLGLAERRKQLAGTLSGGWKQRLALAACVLHEPELLLLDEPTAGVDPKARRDFWDHIH 179

Query: 182 HLKAKGIGVLITDHNVRETLDICETAYIVNDGRLIAEGDAETIL 225
            L A G+ VL++ H + E     E +Y+   GRL+  G    ++
Sbjct: 180 RLAAGGMTVLVSTHYMDEAERCHEISYLAY-GRLMVRGTVSEVI 222