Pairwise Alignments

Query, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

Subject, 474 a.a., RNA polymerase sigma-54 factor RpoN from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  290 bits (741), Expect = 1e-82
 Identities = 176/492 (35%), Positives = 263/492 (53%), Gaps = 42/492 (8%)

Query: 11  QQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQE-------DGEDFDNSDPMA 63
           Q+ T++P+LQ A+RLLQ+S+LD    +++ L  NP LE ++       DG      D   
Sbjct: 10  QRQTLSPRLQHAVRLLQMSSLDFGIVVRDVLGRNPFLEAEDEAAEEARDGGPDTRPDEGR 69

Query: 64  DNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASSLPSND 123
           D     PAA  +D    +    A    DG+ S        +D   E++            
Sbjct: 70  DAQAEPPAASDRDLWLADGLAPARQGHDGDVSA-------LDFVMEEV------------ 110

Query: 124 DDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEEICAG 183
                          L +HL  QL    +S  D  +A  +++S++  GYL   L  +C  
Sbjct: 111 --------------PLNAHLHAQLGTMALSPRDLALAGVVVESLDDDGYLRSPLTALCGV 156

Query: 184 FDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEAKRLVTDF 243
                   L++++  L  +Q  EP GV AR++ ECL LQL ++         A+ +V   
Sbjct: 157 AAVTPAATLEDLQIALKLVQSLEPVGVAARDVAECLSLQLGEIECPH-LRAMARTIVHGH 215

Query: 244 IDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPDVIVRKDSD 303
           +  L +RD   + R +     E+    + ++ L+PRPG +  SS+  ++VPDVIVRKD  
Sbjct: 216 LHSLAARDVPAMARALGASAGEVEMACDRIRHLDPRPGWRQSSSQVNWIVPDVIVRKDRG 275

Query: 304 RWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKV 363
            W V+LN   +PR+R+N  YA   +R    A+NT M   LQEARW +++++ R  T++ V
Sbjct: 276 VWDVQLNAAVVPRVRLNEVYAQLFQR-HRGAENTEMGAHLQEARWTVRNVEQRFSTILDV 334

Query: 364 ATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELKYFF 423
           +  IV  QR F ++G  AMKPL L +IA+ VG+HEST+SRVT  KYM TP G+YELK+FF
Sbjct: 335 SQAIVRRQRHFFEYGSMAMKPLGLREIADEVGVHESTVSRVTNNKYMATPTGVYELKHFF 394

Query: 424 SSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRE 483
           S  + ++ G  CS TAIR +I+ ++ +E+  +PLSD++I   L  QG+ VARRTV KYR+
Sbjct: 395 SRAMVSANGKACSGTAIRGLIQDIIESESTGQPLSDAEITRQLARQGLTVARRTVTKYRQ 454

Query: 484 SLGIAPSSERKR 495
            L I     RKR
Sbjct: 455 MLRIDAVGRRKR 466