Pairwise Alignments

Query, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

Subject, 503 a.a., RNA polymerase sigma-54 factor from Magnetospirillum magneticum AMB-1

 Score =  307 bits (786), Expect = 6e-88
 Identities = 191/506 (37%), Positives = 290/506 (57%), Gaps = 26/506 (5%)

Query: 3   PSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSDPM 62
           P L ++  Q L MTPQLQQAI+LLQLS  +L   I + LE NP+LER+E     + ++P 
Sbjct: 5   PRLDIRQTQSLVMTPQLQQAIKLLQLSNFELTAFIDQELERNPLLEREEGERGPEPTEPK 64

Query: 63  ADNAENKPAAEVQDNSFQESTV-------SADNLEDGEWSERIPNELPVDTAWEDI---Y 112
            D+ +      V D++  E+ +       SA++  D ++     N+   D   ++    +
Sbjct: 65  VDSTD----LAVLDSAPAEAPLLDGMNGGSAEDGMDVDYDNTFNNDSASDAVQDESLGQW 120

Query: 113 QTSASSLPSNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGY 172
                     DD E +     +   SL+ HL  Q+++      DRLIA+ LI+ ++  GY
Sbjct: 121 GNVGGGGGGFDDGESNLEQMVAGEISLRDHLAAQVSMDIPDAGDRLIALHLIEMLDEAGY 180

Query: 173 LEDTLEEICAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPW 232
           L   L+E+       L    + V  VL R+Q F+P GV AR+L ECL LQL +     P 
Sbjct: 181 LIGDLDELAE----RLGCPTERVLVVLKRVQGFDPVGVFARSLKECLGLQLAEKNRLDP- 235

Query: 233 MTEAKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYV 292
              A + + D ++LL  RD   LM+   +  +++ ++I  +++L+P+P    +    + V
Sbjct: 236 ---AMQALLDNLELLARRDLPGLMKACGVDAEDMAEMIGEIKALDPKPALAFDHIVAQPV 292

Query: 293 VPDVIVRKDSD-RWLVELNQEAIPRLRVNPQYAGFVRRADTSADN-TFMRNQLQEARWFI 350
            PDV++R+  D  W+VELN + +PR+ VN +Y   +  A  S D+ T++  + Q A W +
Sbjct: 293 TPDVLMRRTQDGAWVVELNSDTLPRVLVNTRYYSKIAGAARSKDDKTYISERFQSANWLV 352

Query: 351 KSLQSRNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYM 410
           KSL  R  T++KVAT+IV  Q  F   G + ++PLVL DIA A+ MHEST+SRVT+ KYM
Sbjct: 353 KSLHQRATTILKVATEIVRQQDAFFRLGVQHLRPLVLRDIATAISMHESTVSRVTSNKYM 412

Query: 411 HTPRGIYELKYFFSSHVSTSEGGEC-SSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQ 469
            TPRGIYELKYFF+  + +++GG+  S+ ++R  IK L+ AE  K  LSD  I   L+A+
Sbjct: 413 ATPRGIYELKYFFTQAIGSADGGDAHSAESVRHRIKALIDAEG-KSVLSDDSIVDALKAE 471

Query: 470 GIQVARRTVAKYRESLGIAPSSERKR 495
           GI +ARRTVAKYRE++ I  S +R+R
Sbjct: 472 GIDIARRTVAKYREAMNIGSSVQRRR 497