Pairwise Alignments

Query, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

Subject, 483 a.a., RNA polymerase sigma-54 factor from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  278 bits (711), Expect = 3e-79
 Identities = 171/511 (33%), Positives = 281/511 (54%), Gaps = 52/511 (10%)

Query: 7   LKMGQQLT--MTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLER-QEDGEDFDNSDPMA 63
           L + Q L+  ++PQ  Q I+LLQ+ T +L+  ++E LE NP LE  +E+G+D        
Sbjct: 4   LNLNQVLSQKLSPQQIQFIKLLQVPTAELEARVEEELEINPALEEGKEEGDD-------- 55

Query: 64  DNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIY-----QTSASS 118
                            +  V ADN ++G   ++   ++ ++    D Y     Q   + 
Sbjct: 56  ----------------AQEEVLADNYDEGNKEDK---DINLEDYLSDDYGGYKMQGDGNY 96

Query: 119 LPSNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLE 178
            P  +D E       S+G SL   LL QL+   + +  +LI   LI SI   GY+   LE
Sbjct: 97  TPDEEDREMPL----SSGTSLHEQLLSQLSFLRLDEHQKLIGKQLIGSIESDGYIRRDLE 152

Query: 179 EIC--AGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQL-RQLPATTPWMTE 235
            I     F   ++ +LDEVE VL +IQ F+PAG+ AR+L ECL++QL R+       + +
Sbjct: 153 AIINDLAFSQNVETDLDEVEEVLRKIQNFDPAGIAARSLQECLIIQLERKEHQEDEVVQK 212

Query: 236 AKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIES-SEPEYVVP 294
           A ++VTD  D    + Y +++++  + E++L++VI+++  LNP+PG   +     +Y++P
Sbjct: 213 AIKVVTDCFDEFTKKHYDKILKKCNLSEEDLKEVIQMITRLNPKPGGGSDGLMRTQYIIP 272

Query: 295 DVIVRKDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADN--------TFMRNQLQEA 346
           D ++   + +  + LN    P LRV+  Y+      + S           +F++ +L  A
Sbjct: 273 DFLLNVVNGKPEITLNSRNAPELRVSRSYSEMFEAYEKSDKKDKKLKDTVSFVKQKLDAA 332

Query: 347 RWFIKSLQSRNETLMKVATQIVEHQRGFLDHGDEA-MKPLVLHDIAEAVGMHESTISRVT 405
           +WFI +++ R +TL+K    I+++Q+ F + GDE  +KP++L DIAE + M  ST+SRV 
Sbjct: 333 KWFIDAIKQRQQTLLKTMHAILDYQKEFFEEGDETKLKPMILKDIAERIDMDISTVSRVA 392

Query: 406 TQKYMHTPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGL 465
             K + T  G++ LKYFFS  +ST  G + S+  ++++++KLV  E+++KPLSD K+  L
Sbjct: 393 NSKAIQTEFGVFPLKYFFSEGISTEGGEDVSNREVKSVLQKLVDNEDKRKPLSDDKLVKL 452

Query: 466 LEAQGIQVARRTVAKYRESLGIAPSSERKRL 496
           L  +G  +ARRTVAKYRE L I  +  RK L
Sbjct: 453 LNEKGYNIARRTVAKYREQLQIPVARLRKEL 483