Pairwise Alignments

Query, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

Subject, 514 a.a., RNA polymerase sigma-54 factor from Agrobacterium fabrum C58

 Score =  306 bits (783), Expect = 1e-87
 Identities = 192/515 (37%), Positives = 292/515 (56%), Gaps = 34/515 (6%)

Query: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSD 60
           +  SL+L+  Q L MTPQL Q+I+LLQ++  +L Q I + +E NP+LE   +  D  +  
Sbjct: 3   LSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGSDT 62

Query: 61  PMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSAS--- 117
           P+  + +N   AE  D + + +  S D    GE +  +  +L  DT++E+++        
Sbjct: 63  PV--DVDNFGDAEASDAAVRVTPDSDDWY--GERAANLGEQL--DTSFENVFPDDGEPRK 116

Query: 118 -----------SLPSNDDDE-WDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLID 165
                      S+P  +  E +D     +A +SL  HL  QL LA  +  DR+IA  LI 
Sbjct: 117 ADAPELASQWKSMPGQESGESYDLDDFVAARQSLSDHLNQQLPLAISAAEDRMIADALIG 176

Query: 166 SINGQGYLE-DTLEEICAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLR 224
            ++  GY+  D ++++       L      VE VL  +Q F+P G+ +R+L ECL  QL 
Sbjct: 177 QLDETGYIAADAVDDVAE----RLGATPSAVEYVLKTLQGFDPPGIFSRSLSECLATQLA 232

Query: 225 QLPATTPWMTEAKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQI 284
           Q     P    A R   D ++LL  RD++ L +   + E++L  ++  +++LNPRPG+  
Sbjct: 233 QKDRLDP----AMRAFVDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGAGY 288

Query: 285 ESSEPEYVVPDVIVRKDSDR-WLVELNQEAIPRLRVNPQYAGFV--RRADTSADNTFMRN 341
           +S   E +VPD+IVR  S   WLVE+N + +PR+ +N  Y   V   +A    D  F+  
Sbjct: 289 DSMVSETIVPDIIVRPSSTGGWLVEINPDTLPRVLINQSYFAEVSKHKARAGEDQDFLSE 348

Query: 342 QLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTI 401
            +Q A W  +SL  R  T+MKVA++IV  Q  FL +G + ++PL L  +A+A+ MHEST+
Sbjct: 349 CMQTAHWLTRSLDQRARTIMKVASEIVRQQDAFLINGVDQLRPLNLKTVADAIKMHESTV 408

Query: 402 SRVTTQKYMHTPRGIYELKYFFSSHVSTSEGGEC-SSTAIRAIIKKLVAAENQKKPLSDS 460
           SRVT++KYM TPRG++ELKYFFS  +S  EGG+  S+ A+R  IK ++A E  +  LSD 
Sbjct: 409 SRVTSKKYMLTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAAEAVLSDD 468

Query: 461 KIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKR 495
            I   L+  GI +ARRTVAKYRE++ I  S +R+R
Sbjct: 469 DIVDNLKKTGIDIARRTVAKYREAMNIPSSVQRRR 503