Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 416 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodanobacter sp000427505 FW510-R12

 Score =  119 bits (299), Expect = 1e-31
 Identities = 106/366 (28%), Positives = 166/366 (45%), Gaps = 46/366 (12%)

Query: 59  PKPPITVAAAMAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLL 118
           P  P+TV   + +  P    L A+G+++AL  V ++ +V G + SLHF  GQ VK GQLL
Sbjct: 53  PPVPVTVVPVVKQNVPVY--LTALGTVQALNTVTVNPQVGGQLLSLHFSEGQPVKKGQLL 110

Query: 119 LQLND-------DQETALLGTALADLGLAKVDFGRGSQLVGDSAISRGEFDRL---SSQY 168
            Q++        DQ  A      A    AK +  R   L     IS+ + D L   ++QY
Sbjct: 111 AQIDPRIYQAAYDQAVARQRQDQALAATAKSNLTRSRDLAAKGYISKQDLDTLRNTAAQY 170

Query: 169 R----RNQAVVEQLKAQKIKKRINAPFSGTIGIRQVDIGQYLAAGTVIATLQDTSSLYVD 224
                 + A V   + Q    R+ +P     GIR VD G  +   + I TL     + V 
Sbjct: 171 EAAVAADAANVRDTQVQLNYTRVLSPIDSLAGIRAVDPGNVVTTSSAIVTLTQLHPINVM 230

Query: 225 FNVPEQALPHL---------SLGQQVLVQVAAYPGQRFPGSLSAINPKVEETTRNLLVRA 275
           F +PEQ L  +         +L    L +  A+P     G L  ++ +++ +T    +++
Sbjct: 231 FTLPEQNLDMVRRAAAKDGAALQVTALDRTDAHP-IADGGVLKVVDNQIDTSTGTFRLKS 289

Query: 276 TMANPDGKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYD 335
              N + +L PG F ++ +L+      +V+P  A+              ++  DG  VY 
Sbjct: 290 EFPNANNELWPGQFVNVRLLVNTVDGGLVIPAQAV--------------QRGPDGDYVYQ 335

Query: 336 DKGQPQLVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAIRIGQDNALKP 395
            +    +  +  TV  GE  D  V+V  GL+AG++VVT GQ +L PG+ +     NALKP
Sbjct: 336 VQADSTVKMQAVTV-AGEVGDSHVMVGSGLKAGDRVVTEGQFRLKPGSKV-----NALKP 389

Query: 396 EPGAAA 401
               AA
Sbjct: 390 GEVPAA 395