Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 421 a.a., Efflux pump periplasmic linker BepF from Xanthobacter sp. DMC5

 Score =  129 bits (324), Expect = 2e-34
 Identities = 115/395 (29%), Positives = 179/395 (45%), Gaps = 46/395 (11%)

Query: 21  PMLRRRMLIMLAVVLLIVLALGGY-KAFSIYQQIQMFTAPKPPITVAAAMAEQRPWQERL 79
           P LR  +L+  A +L +   L G  K    +       A  P + V+ A  EQR  +   
Sbjct: 25  PRLREALLLGTAALLAVFGVLYGLPKEGGAHADKPAAAAAPPAVPVSVATVEQRDARLFD 84

Query: 80  PAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQLNDD-------QETALLGT 132
              G L+A++ V++   V G +K++HF  G  V+ G+LL+ ++ +       +  A + +
Sbjct: 85  TFSGRLEAVERVEVRSRVAGAIKAVHFREGALVREGELLVSIDPEPYEADVAEAEAQVAS 144

Query: 133 ALADLGLAKVDFGRGSQLVGDSAISRGEFD-RLSSQ------YRRNQAVVEQLKAQKIKK 185
             A L LA+ +  RG +L     +S+   D RL+ Q       R  QA +   K      
Sbjct: 145 VQARLDLARNELERGEKLFTTKTLSQSTLDERLNGQRAAEAGLRAAQAKLAAAKLNLSYT 204

Query: 186 RINAPFSGTIGIRQVDIGQYLAAGT---VIATLQDTSSLYVDFNVPE----QALPHLSLG 238
           ++ AP SG +G  ++ +G  +AAG    V+ TL     +Y  F+  E    +AL  L  G
Sbjct: 205 KVRAPVSGRVGKSEITVGNLVAAGPGAPVLTTLVSVDPIYASFSADEATVARALAGLGGG 264

Query: 239 QQVLVQVAAYP-----GQRFP---GSLSAINPKVEETTRNLLVRATMANPDGKLLPGMFA 290
             V  ++   P         P   G +  ++ +V+  T  + VRA  +NPDG+LLPG F 
Sbjct: 265 GDVADRLDQIPVLMTLASGVPPVEGVMQLVDNQVDPRTGTVRVRARFSNPDGRLLPGQFV 324

Query: 291 SLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRTVK 350
            L +  P   P V+V E A+        V+V     D   K V+            R V 
Sbjct: 325 RLEMGQPKAAPAVLVSERAVGTDQDKKFVFVV----DASNKAVW------------REVT 368

Query: 351 TGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAI 385
            G   DG+ VV+ GL AGE+VV  G  ++ PGAA+
Sbjct: 369 LGAPVDGLRVVTNGLAAGERVVVNGLHRVRPGAAV 403