Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 408 a.a., Efflux pump periplasmic linker BepF from Xanthobacter sp. DMC5

 Score =  114 bits (286), Expect = 4e-30
 Identities = 113/403 (28%), Positives = 173/403 (42%), Gaps = 54/403 (13%)

Query: 34  VLLIVLALGGYKAFSIYQQIQMFTAPKPP-ITVAAAMAEQRPWQERLPAVGSLKALQGVD 92
           VL + LAL G    +  QQ     AP PP +TVA   +      +    VG   A+  V+
Sbjct: 22  VLALALALAGCGQPTAQQQ----GAPPPPQVTVANPTSANVTDTDEY--VGRFVAIDEVN 75

Query: 93  LSLEVEGIVKSLHFDSGQQVKAGQLLLQLND-------DQETALLGTALADLGLAKVDFG 145
           +   V G +  + F  GQ VK G +L  ++        DQ  A L  A A+L   K D  
Sbjct: 76  VRARVSGYLDKIDFVDGQLVKEGDVLFTIDQRPFKIAVDQAQANLAQAKANLDFTKADLE 135

Query: 146 RGSQLVGD---SAISRGEFDRLSSQYRRNQAVVEQLKAQKIKKRIN-------APFSGTI 195
           R   L+ D   +AIS+  FD+ +   R   A+V+  +AQ    +++       AP SG I
Sbjct: 136 RARTLLEDKTSNAISKQAFDQRTQAERTAAAIVQSQEAQVRSAQLDLGFTEVKAPVSGQI 195

Query: 196 GIRQVDIGQYLAAGT-----VIATLQDTSSLYVDFNVPEQALPHLSL--------GQQVL 242
           G R+V +G Y+  GT     ++A +  T  +  +F + E +L  L+         G+ V 
Sbjct: 196 GDRRVSVGNYVTGGTGGTPTLLAVIVSTDPIRFEFTIDEASLLRLTRRKGGTDFKGEPVT 255

Query: 243 VQVAAYPGQRFPGSLSAINPKVEETTRNLLVRATMANPDGKLLPGMFASLLILLPNPQPQ 302
           +++         G L  +N  V+  T  +  RA   N  G   PGMFA + +   +P   
Sbjct: 256 LKLIDDKDFVHKGKLDFLNNVVDRETGTIRGRAIFDNKTGLFRPGMFARIRLQSSDPYQA 315

Query: 303 VVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRTVKTGERRDGVVVVS 362
           +VVP+ AI        VYV  P          D+K        Q+ V  G  +  + V+ 
Sbjct: 316 LVVPDVAIGTEQVKKFVYVVGP----------DNK------VSQKFVTLGPLQGDMRVIR 359

Query: 363 EGLQAGEQVVTAGQLKLTPGAAIRIGQDNALKPEPGAAAKDSG 405
           EGL   ++VV  G +++ PG  +   Q     P  GA    +G
Sbjct: 360 EGLGPDDKVVVNGLMRVRPGVTV-TPQVAGAAPAAGAPGAPAG 401