Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 388 a.a., RND transporter MFP subunit from Pseudomonas simiae WCS417

 Score =  112 bits (279), Expect = 2e-29
 Identities = 101/392 (25%), Positives = 176/392 (44%), Gaps = 50/392 (12%)

Query: 23  LRRRMLIMLAVVLLIVLALGGYKAFSIYQQIQMFTAPKPPITVAAAMAEQRPWQERLPAV 82
           ++R+  ++  V++++ +A     A+++ +  +   A    I V      Q+     +  +
Sbjct: 3   IQRKTALIAGVLVVLAVA-----AWALTRPAKSKLAAPTAIPVRVVSVAQQDIPRFVSGI 57

Query: 83  GSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQLND-------DQETALLGTALA 135
           GS+ +L  V +  +V+GI+  L    GQ VKAG LL  ++D       DQ  A LG + A
Sbjct: 58  GSVLSLHSVVIRPQVDGILTKLLVKEGQLVKAGDLLATIDDRSIRASLDQAKAQLGESQA 117

Query: 136 DLGLAKVDFGRGSQLVGDSAISRGEFD-------RLSSQYRRNQAVVEQLKAQKIKKRIN 188
            L +A V+  R   L  D  +S+  +D       +L +  + NQA ++  + Q    +I 
Sbjct: 118 QLQVALVNLKRYKALSVDDGVSKQTYDQQQALVNQLKATAQGNQAAIDSAQVQLSYTQIR 177

Query: 189 APFSGTIGIRQVDIGQYLAAGTV--IATLQDTSSLYVDFNVPEQALPHLS--LGQQVLVQ 244
           +P SG +GIR VD G +L       + ++     + V+F++P+Q LP L   +       
Sbjct: 178 SPVSGRVGIRTVDEGNFLRTSDAQGLFSVTQIDPIAVEFSLPQQMLPTLQGLIAAPTQAS 237

Query: 245 VAAYPGQRFPGS---------LSAINPKVEETTRNLLVRATMANPDGKLLPGMFASLLIL 295
           V AY G    G          LS I+ ++  TT  L  +A   N   +L PG   ++ I 
Sbjct: 238 VDAYLGADTDGQTGDLLGEGHLSLIDNQISSTTGTLRAKAEFNNASQRLWPGQLVTIKIQ 297

Query: 296 LPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRTVKTGERR 355
               +  +VVP + +   L  + VY  +  K               +V  Q T      +
Sbjct: 298 TALDKNALVVPPTVVQRGLDSHFVYRVNGDK-------------VDVVPVQVTY-----Q 339

Query: 356 DGVVVVSEGLQAGEQVVTAGQLKLTPGAAIRI 387
           D  V + +G+QAG+ +V+ GQ +L  GA + +
Sbjct: 340 DSDVNIIKGVQAGDVLVSDGQSRLKAGAQVEV 371