Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 433 a.a., secretion protein HlyD from Pseudomonas simiae WCS417

 Score =  116 bits (290), Expect = 1e-30
 Identities = 106/356 (29%), Positives = 168/356 (47%), Gaps = 40/356 (11%)

Query: 62  PITVAAAMAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQL 121
           P+ VA A+  + P   +  A+G++ AL  +++   V G +  + F+ GQ VKAG LL ++
Sbjct: 67  PVRVAPAVLGEFPVYYK--ALGTVTALNTINVRSRVGGELVKIAFEEGQMVKAGDLLAEI 124

Query: 122 ND-DQETALL---GTAL---ADLGLAKVDFGRGSQLVGDSAISRGEFDRLSS---QY--- 168
           +    + ALL   GT +   A L  A+VD  R   L    +I++   D   +   QY   
Sbjct: 125 DPRSYQNALLQAQGTLMQNQAQLKNAQVDVQRYRDLYAQDSIAKQTLDTAEALVLQYQGT 184

Query: 169 -RRNQAVVEQLKAQKIKKRINAPFSGTIGIRQVDIGQYLAAG--TVIATLQDTSSLYVDF 225
            + NQ  V+  K      +I AP SG +G+RQVD+G  +AA   T +A +  T  + V F
Sbjct: 185 VKTNQGAVDDAKLNLEFTKIRAPISGRVGLRQVDVGNLVAANDTTFLAVITQTQPISVAF 244

Query: 226 NVPEQ----ALPHLSLGQQVLVQV--AAYPGQRFPGSLSAINPKVEETTRNLLVRATMAN 279
            +PE      L     G ++ V+        Q+  G L +++ +++ TT  L  +A   N
Sbjct: 245 TLPENTLETVLTRYHAGNKLPVEAWDRGDVKQQAVGVLQSLDNQIDVTTGTLKFKARFDN 304

Query: 280 PDGKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQ 339
            D  L P  F ++ +L       V+ P +AI +   G  VYV     D D K     K Q
Sbjct: 305 KDQALFPNQFVNVHLLADTLHNVVLAPSAAIQFGNTGTFVYVL----DGDKKV----KVQ 356

Query: 340 PQLVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAIRIGQDNALKP 395
           P +V        G+      V+ EGL+AG++VV  G  +L  G+ I +  D++  P
Sbjct: 357 PLVV--------GDTDGDNTVIKEGLKAGDRVVLEGTDRLKDGSEIEVVNDSSEVP 404