Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 512 a.a., Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA from Variovorax sp. SCN45

 Score =  134 bits (336), Expect = 8e-36
 Identities = 107/365 (29%), Positives = 165/365 (45%), Gaps = 38/365 (10%)

Query: 64  TVAAAMAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQLND 123
           TV  A A++     +L A+G++  L  V +  +V G++ ++ F  GQ VK G +L  ++ 
Sbjct: 92  TVGIATAKKADIPVQLEALGTVTPLANVVVQPQVSGVLTAVLFQEGQMVKKGDVLATIDP 151

Query: 124 DQETALLGTAL-------ADLGLAKVDFGRGSQLVGDSAISRGEFDRLSSQYRRNQAVV- 175
                 L  A        A L  A+V   R   L+G  +I+R + D  ++  ++ +  V 
Sbjct: 152 QPFQNALAQATGARQRDEAQLAAARVTLSRYQTLLGQDSIARQDVDTQAALVKQLEGTVA 211

Query: 176 ------EQLKAQKIKKRINAPFSGTIGIRQVDIGQYLAAGTV--IATLQDTSSLYVDFNV 227
                    K      RI AP SG IG+R VD G Y++ G    IAT+   + + V+F +
Sbjct: 212 IDRANENTAKLNLTWSRITAPVSGRIGLRPVDAGNYISTGATNGIATITQITPIDVEFAI 271

Query: 228 PEQALPHLS--LGQQVLVQVAAYPGQRF----PGSLSAINPKVEETTRNLLVRATMANPD 281
           P+  +P +   L Q   +   A+   R      G+ + ++  V+  T  +  +A  +N D
Sbjct: 272 PQDRVPEVQDRLAQGAKLDATAFDRTRTRRLATGAFATLDNLVDTATGTVKAKARFSNAD 331

Query: 282 GKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQ 341
             L P  F +L +LL      VVVP +A+ +   G+ VYV      KD   V        
Sbjct: 332 NTLFPNQFVNLRLLLRTVDSAVVVPVTALRHGPNGDYVYVL-----KDDSTV-------- 378

Query: 342 LVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAIRIGQDNALKPEPGAAA 401
               QRTV  GE     V +  GL AGEQVVT G  +L  GA ++   D    P  GAA+
Sbjct: 379 ---AQRTVTRGEASVDNVAIMSGLTAGEQVVTEGGDRLKDGARVQTTVDRPAAPPAGAAS 435

Query: 402 KDSGG 406
            +  G
Sbjct: 436 GERRG 440