Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 411 a.a., Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA from Variovorax sp. SCN45

 Score =  117 bits (294), Expect = 5e-31
 Identities = 108/412 (26%), Positives = 178/412 (43%), Gaps = 47/412 (11%)

Query: 19  TGPMLRRRMLIMLAVVLLIVLALGGYKAFSIYQQIQMFTAPK-----PPITVAAAMAEQR 73
           TG  L +R    LA   L+VL  GG  A+++ QQ      P+     PP+ V     +Q+
Sbjct: 11  TGHPLFQRRSTWLAAATLVVLLGGG--AWALTQQSAHAAKPEAAQAPPPVQVTTVRVKQQ 68

Query: 74  PWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQLNDDQETALLGTA 133
             Q     +G++ ++  V +   ++G +  + F  GQ VKAGQ+L QL+     A L  A
Sbjct: 69  EVQTYRSGIGTVASMATVTVKARIDGQLDKVGFVEGQDVKAGQMLAQLDPRTLQAQLAQA 128

Query: 134 -------LADLGLAKVDFGRGSQLVGDSAISRGEFD-------RLSSQYRRNQAVVEQLK 179
                   A L  A+ D  R + L+   A ++ + D       +L +  + + A V+  +
Sbjct: 129 QATRAKDQATLVNARADLKRYTTLIAQDAATQQQLDTQKALVNQLEATVQNDAAQVQYAE 188

Query: 180 AQKIKKRINAPFSGTIGIRQVDIGQYLAAGTV--IATLQDTSSLYVDFNVPEQALPHLSL 237
            Q    RI++P  G +G R VD G  + A     +  +     + V F +PE A+  ++ 
Sbjct: 189 VQLSFTRISSPMDGRVGARLVDPGNIVHAADTNGLVVINQIDPIAVQFTLPEDAVQDINR 248

Query: 238 GQQVLVQ---VAAY--PGQRF--PGSLSAINPKVEETTRNLLVRATMANPDGKLLPGMFA 290
            QQ   Q   V AY   G +    G L  +N +++ T+  + ++ + ANP   L PG + 
Sbjct: 249 LQQKSSQPLSVVAYDRSGAQMLGTGKLILLNNQIDTTSGTVQLKGSFANPQHALWPGQYV 308

Query: 291 SLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRTVK 350
           ++ + L      + VP +A+        V+V          PV+                
Sbjct: 309 NVRLQLERRPDSLTVPAAAVQRGQDNTYVWVVDDENKVSNVPVH---------------- 352

Query: 351 TGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAIRIGQDNALKPEPGAAAK 402
             +  DG  V+ +GL   ++VV  GQ KL PG+ + I    A K   G  AK
Sbjct: 353 VVQIADGTAVIDKGLSVNQRVVVDGQYKLKPGSTV-IEPPPAQKAGAGTDAK 403