Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  123 bits (308), Expect = 1e-32
 Identities = 111/386 (28%), Positives = 171/386 (44%), Gaps = 50/386 (12%)

Query: 31  LAVVLLIVLALGGYKAFSIYQQIQMFTAPKPPITVAA-AMAEQRPWQERLPAVGSLKALQ 89
           L  +L +  A+ G  +F              P++VA  A +E   W E     G L+A++
Sbjct: 23  LTALLAVAAAVVGMYSFKAEANNTPAAPQATPVSVATVASSEINAWDE---FSGRLEAVE 79

Query: 90  GVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQLND-------DQETALLGTALADLGLAKV 142
            VD+   V G V+++HF  G  VK G LL+ ++        ++  A + +A A    ++ 
Sbjct: 80  RVDVRSRVAGAVQAVHFREGALVKQGDLLVTIDPAPYAAEVERAEAQVASAQARQSFSRS 139

Query: 143 DFGRGSQLVGDSAISRGEFDRLSSQYRRNQAVVEQLKAQKIKKRIN-------APFSGTI 195
           +  R  +L  D AI++ EFD   +  R   A +   +A     R+N       AP SG I
Sbjct: 140 EQERAKRLWDDKAIAQREFDERVNAGREADANLRAAQASLQSARLNLGYTQVRAPVSGRI 199

Query: 196 GIRQVDIGQYLAAGT---VIATLQDTSSLYVDFNVPEQ----ALPHLSLGQQVLVQVAAY 248
           G  +V +G  +AAG    V+ TL   S +Y  F+  EQ    AL  L  G     Q+ + 
Sbjct: 200 GRIEVTVGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKDLPTGSSARGQIESI 259

Query: 249 P---------GQRFPGSLSAINPKVEETTRNLLVRATMANPDGKLLPGMFASLLILLPNP 299
           P         G  F G L  I+ +V+  +  + VRA+  N DG L+PG FA + +     
Sbjct: 260 PVQMGTAGLDGTPFTGKLQLIDNQVDAKSGTVRVRASFDNKDGALIPGQFARIRMGQARS 319

Query: 300 QPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRTVKTGERRDGVV 359
              ++V E AI        V V      +D K  Y            R V  G   +G+ 
Sbjct: 320 DSALLVSERAIGTDQNKKFVMVVG----EDSKATY------------REVTLGASINGLR 363

Query: 360 VVSEGLQAGEQVVTAGQLKLTPGAAI 385
           VVS+GL+AG++V+  G   + PGA +
Sbjct: 364 VVSKGLKAGDRVIVNGLQHIRPGALV 389