Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 369 a.a., Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system from Variovorax sp. SCN45

 Score =  230 bits (586), Expect = 6e-65
 Identities = 142/360 (39%), Positives = 205/360 (56%), Gaps = 29/360 (8%)

Query: 36  LIVLALGGYKAFSIYQQIQMFTAP---KPPITVAAAMAEQRPWQERLPAVGSLKALQGVD 92
           L  L LGG   F +  +++   A     PP  VA A A++      L  +G+L+A + V+
Sbjct: 13  LATLVLGG-AGFGLAMKLRPAHAEGGGMPPAKVAVATAQKTQVARFLSGIGTLEANRQVE 71

Query: 93  LSLEVEGIVKSLHFDSGQQVKAGQLLLQLNDDQETALLGTALADLGLAKVDFGRGSQLVG 152
           +  EVEG V  + F  G +V+AGQLL+QLND  E   +    A    AK    R  +L+ 
Sbjct: 72  VPAEVEGRVAKILFTPGGEVRAGQLLVQLNDAPEQGDMERLTAQRANAKALLERTRRLLP 131

Query: 153 DSAISRGE-------FDRLSSQYRRNQAVVEQLKAQKIKKRINAPFSGTIGIRQVDIGQY 205
             A ++ +       FD+ S   RR QAV+EQ       KRI APF G +GIR+V++GQ+
Sbjct: 132 QQAATQEQLEQAQAAFDQASGDLRRAQAVLEQ-------KRIKAPFDGVLGIRRVNLGQF 184

Query: 206 LAAGTVIATLQDTSSLYVDFNVPEQALPHLSLGQQVLVQVAAYPGQRFPGSLSAINPKVE 265
           + AG  + +L D+ +L+ +  +PE ALP L   QQV + V AYPG+ F G LS I P++ 
Sbjct: 185 VRAGDALVSLTDSRTLFANLTLPETALPVLKRNQQVALSVDAYPGRVFQGRLSTIEPQIG 244

Query: 266 ETTRNLLVRATMANPDGKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVYVASPR 325
             TR + ++AT+ N DG L PGMF +  + LP     + VPE+AITY+ +G+SV+V  P 
Sbjct: 245 SDTRTVRLQATIDNADGALTPGMFVNGKVALPARPDAITVPETAITYSTHGDSVFVVRPA 304

Query: 326 KDKDGKPVYDDKGQPQLVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAI 385
           +  DG             A+Q  VK GER+DG+VV+  GL  G++VVT+GQL+L  GAA+
Sbjct: 305 EKGDG-----------FTAQQVFVKAGERQDGLVVIENGLAPGDKVVTSGQLRLYTGAAV 353