Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  192 bits (488), Expect = 1e-53
 Identities = 127/338 (37%), Positives = 187/338 (55%), Gaps = 13/338 (3%)

Query: 61  PPITVAAAMAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQ 120
           P   VA A AEQ     +  A G L+A+  V ++ E+ G +  + F+SGQ V AGQLL+Q
Sbjct: 37  PATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQ 96

Query: 121 LNDDQETALLGTALADLGLAKVDFGRGSQLVGDSAISRGEFDRLSSQYRRNQAVVEQLKA 180
           LND  E AL     A L  A V   R  +L   +A+S+   D  ++     +  ++ ++A
Sbjct: 97  LNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEA 156

Query: 181 QKIKKRINAPFSGTIGIRQVDIGQYLAAGTVIATLQDTSSLYVDFNVPEQALPHLSLGQQ 240
              +K I APF+G +GIR+V  GQYLAAG  I +L D S L+V+F + EQA P +  GQ 
Sbjct: 157 LIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQV 216

Query: 241 VLVQVAAYPGQRFPGSLSAINPKVEETTRNLLVRATMANPDGKLLPGMFASLLILLPNPQ 300
           + + V A  GQ F   + A++P V  T R + V+A + NP G+L PGM+A + +    P 
Sbjct: 217 LALTVDAVRGQDFQARVVAVDP-VVSTARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPS 275

Query: 301 PQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRTVKTGERRDGVVV 360
             + VPE+AITYT YG +V+VA+ +  + G  V            +  V TGER  G V 
Sbjct: 276 TVLAVPETAITYTAYGQTVFVAT-QDPQHGTRV-----------SRVQVTTGERWQGRVE 323

Query: 361 VSEGLQAGEQVVTAGQLKLTPGAAIRIGQDNALKPEPG 398
           ++ GL  G++VV +GQLKL+ G  +     ++L+   G
Sbjct: 324 ITSGLTPGDRVVVSGQLKLSDGMPVEPVAQDSLQASQG 361