Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 430 a.a., efflux RND transporter periplasmic adaptor subunit from Magnetospirillum magneticum AMB-1

 Score =  110 bits (276), Expect = 6e-29
 Identities = 102/348 (29%), Positives = 152/348 (43%), Gaps = 38/348 (10%)

Query: 62  PITVAAAMAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQL 121
           P+ V      +R     L A+G+++A   V +   V+G +  + F  GQ V AG +L Q+
Sbjct: 76  PVVVTVTSVARRDMPIYLDAIGTVQAYNTVTVRSRVDGELVEVLFKEGQDVHAGDVLAQI 135

Query: 122 NDDQETALLGTALA-------DLGLAKVDFGR----GSQLVGDSA-ISRGEFDRLSSQYR 169
           +     A    ALA        L  AK D  R    G ++ G S    R    +L +  R
Sbjct: 136 DPRTYRAQYEQALATRDKDSAQLEAAKRDLARYVSLGDRVSGQSVDTQRALVRQLEATVR 195

Query: 170 RNQAVVEQLKAQKIKKRINAPFSGTIGIRQVDIGQYLAAG--TVIATLQDTSSLYVDFNV 227
            ++A     K       I AP  G  G+R VD G  + A   T + TL     + V F +
Sbjct: 196 ADEASASNAKTMLSYTVIAAPIDGRTGMRLVDRGNIVRASDATGLVTLTQVQPISVVFTL 255

Query: 228 PEQALP----HLSLGQQVLVQVAAYPGQRF---PGSLSAINPKVEETTRNLLVRATMANP 280
           P+Q+L      L L  ++ VQ A  P  R     G L  ++ ++++TT  + ++A M N 
Sbjct: 256 PQQSLAAVNEQLRLDGKLAVQ-ALRPETRALADTGELELVDNQIDQTTGTIKLKAVMPNA 314

Query: 281 DGKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQP 340
           + KL PG F ++ +LL   +  +VVP  A+     G   YV + ++D+            
Sbjct: 315 ERKLWPGGFVNVRLLLSTRKDGLVVPAQAVQRGPQG--PYVFAVKEDR------------ 360

Query: 341 QLVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAIRIG 388
               E R VK      G  +V EGL  G+ VV  G  KL PGA I  G
Sbjct: 361 --TVEMRAVKVATVEAGQALVDEGLAEGDTVVVEGTAKLQPGARISTG 406