Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 413 a.a., Multidrug efflux pump subunit AcrA from Acinetobacter radioresistens SK82

 Score =  113 bits (283), Expect = 9e-30
 Identities = 102/371 (27%), Positives = 165/371 (44%), Gaps = 47/371 (12%)

Query: 61  PPITVAAAMAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQ 120
           PP  V   +A+ R  ++ +   G     Q  ++  +  G+++   F  G  V+ GQ L +
Sbjct: 42  PPPEVGVLVAQPRSVEQSVELSGRTSPYQISEVRPQASGVIQKRLFTEGSYVRQGQALYE 101

Query: 121 L-------NDDQETALLGTALADLGLAKVDFGRGSQLVGDSAISRGEFDRLSSQYRRNQA 173
           +       N     A L    A+L + +V  GR  QLVG +AISR E+D + +Q +  QA
Sbjct: 102 IDSRTNRENVASARATLNRQQANLNVLRVKEGRYRQLVGTNAISRQEYDDIVAQVKLAQA 161

Query: 174 VVEQLKAQKIKKRIN-------APFSGTIGIRQVDIGQYLAAGTV--IATLQDTSSLYVD 224
            V   +A+     IN       AP SG      V  G  + A     + T+Q    +YVD
Sbjct: 162 DVNASQAELRNAEINLGYSTVRAPISGQSSRSSVTAGALVTASQTEPLVTIQQLDPIYVD 221

Query: 225 FNVPEQAL---------PHLSLGQQVLVQVAAYPGQRFP--GSLSAINPKVEETTRNLLV 273
            N     L          +LS      V++    G  +P  G+L+     V+  T  + +
Sbjct: 222 INQSSAELLRLRQQLNQGNLSSSNNTKVKLRLEDGSEYPIEGNLAFSGASVDPETGTVTL 281

Query: 274 RATMANPDGKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPV 333
           RA  +NP+  LLPGM+A+  I+       +++P++AIT    G +V +           +
Sbjct: 282 RAVFSNPNHLLLPGMYATAKIVQAVIPNAMLIPQAAITRLPTGQAVAM-----------I 330

Query: 334 YDDKGQPQLVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAIRIGQDNAL 393
            + KG    +AE R V+T   +    +V+ G+QAGE+V+  G  K+  G  +     N  
Sbjct: 331 VNAKG----LAESRPVQTAGVQGKDWIVTSGIQAGERVIVEGIAKVKEGQKV-----NPK 381

Query: 394 KPEPGAAAKDS 404
             +P AAA+ S
Sbjct: 382 PLQPQAAAQGS 392