Pairwise Alignments
Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440
Subject, 1044 a.a., multidrug transporter from Pseudomonas simiae WCS417
Score = 540 bits (1391), Expect = e-157
Identities = 332/1024 (32%), Positives = 564/1024 (55%), Gaps = 31/1024 (3%)
Query: 7 FIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQGYITQP 66
FI RP+ A V++++I+L G + ++L + QYP + + ++ Y GA+A+T++ +TQ
Sbjct: 5 FIDRPIFAWVIAIVIMLGGSLSISQLPLEQYPDIAPPTVKISATYTGASAKTVEDSVTQV 64
Query: 67 LQQSLASAEGIDYMTSVSRQNFSI-ISIYARIGADSDRLFTELLAKANEVRNKLPQDSED 125
++Q + + + YM++ S S IS+ G D D ++ K + ++LPQ +
Sbjct: 65 IEQQMKGLDNLTYMSATSSSAGSASISLTFTAGTDPDVAQMQVQNKLQQAESRLPQSVQS 124
Query: 126 PVLSKEAADASALMYVSFYSKEMS--NPQITDYLSRVIQPKLATLPGMAEAEILGNQVFA 183
L+ + LM V+ S + S QI DY+S + ++ + G+ + + LG+ +A
Sbjct: 125 EGLTVTKGGSDFLMIVALASDDPSVTGTQIGDYISTTLLDSISRIDGVGDVQTLGSG-YA 183
Query: 184 MRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGE------VKGEYVVTSVNASTELKSA 237
MR+WLDP L + L +D+++A+ N +AG+ +KG+ + +++A ++L++
Sbjct: 184 MRIWLDPALLEKYALMPSDISSALEAQNTEVSAGQLGALPAIKGQQLNATISARSKLQTV 243
Query: 238 EAFAALPLKTSGDSRV-LLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVI 296
+ F + +K++ D V LLGDVA +E+G+E+YD ++ +G P+ +G++ AN L+V
Sbjct: 244 DEFRKVVVKSNSDGAVVLLGDVATLELGSESYDISTALNGKPAAAMGVQLAAGANALNVG 303
Query: 297 KEVRRIMPELESQLPSALNVS--IAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGA 354
K V+ + E+E P+ + + IAYD T F+ SI+EV+K LGEA+++V++++FLFL +
Sbjct: 304 KAVKAKLKEMEPFYPTEMQLKNVIAYDTTPFVSLSIEEVVKALGEAIVLVVLIMFLFLQS 363
Query: 355 LRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHME 414
LR+ LIP +T+P+ ++G + + GYS+N LT+ AMVLAIGL+VDDAIVVVEN+ R M
Sbjct: 364 LRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERLMG 423
Query: 415 EGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISG 474
EG SP A + REI+ +V +T+ L+AV+ P+ F G TG ++++F++T+ A+++S
Sbjct: 424 EGLSPVAATRQSMREISGALVGITLVLSAVFIPMAFFGGSTGIIYRQFSVTIVSAMVLSV 483
Query: 475 IVALTLSPMMCALLLR-REQNPSGLAHR----LDQLFERLKGRYQRLLHATLDSRPVVLV 529
+VA+TL+P +CA LL+ R G H ++ FER Y+R + L L+
Sbjct: 484 LVAMTLTPALCATLLKARNGKGHGAQHGFFGWFNRTFERASAGYERWVGVVLRRWGRSLL 543
Query: 530 FAVIILCLIPVLLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTPLFKAFPE 589
++L ++ V P+EDQG++ P A A QF PE
Sbjct: 544 LYGLVLVVMAVGYVSLATSFLPDEDQGILLAQIQLPVGATDSRTQAVIKQFEDYILQQPE 603
Query: 590 YYSSFQINGF----NGVQTGIGGFLLKPWNERERTQMELLPLVQ---AKLEEISGLQIFG 642
+ I+G N T LK W+ER + + Q L I F
Sbjct: 604 VEAMISISGLGMGGNSQNTARAFIRLKDWSERGGSGQGAAAIAQRATLALSSIGDADAFV 663
Query: 643 FNLPSLPGTGEGLPFQFVINTAG--DYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPE 700
P++ G G+ F + G + AL+ ++ A++ + + + D P+
Sbjct: 664 MQPPTVRGLGQSSGFDLQLKDLGGLGHDALVAAREQFLELARKDARLLGVRSNGLDDAPQ 723
Query: 701 VVVDIDRAKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGWL 760
+ V ID KA + +S + TLAT LG +N F +GR KV Q + R L
Sbjct: 724 LKVSIDDRKAGALSLSTSDINSTLATALGGTYVNDFLNQGRVKKVYVQGQASSRMQAADL 783
Query: 761 NNYYVKNDQGQLLPLSTLITLTDRARPRQLNQFQQLNAAIIQG--VPMVSLGEALKTVQD 818
++++V+N +++P S+ + T L ++ + I G P VS G+A+ V+
Sbjct: 784 DHWFVRNSNNEMVPFSSFASSTWGYGSPLLERYNGNASLEIVGDPAPGVSSGDAMAAVEA 843
Query: 819 IAREEAPEGFAFDYAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTV 878
I R + P+G +++ G + Q GS + +G+++ +FL LAA +ES+ P +++ V
Sbjct: 844 IVR-QLPQGIGYEWTGQSYQLRLSGSQAPLLYGISVLFVFLCLAALYESWSVPFSVILVV 902
Query: 879 PLSICGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAIE 938
PL + GA+L + S ++Y QVGL+T +GL +K+ ILIVEFA L+ E+G SV +A
Sbjct: 903 PLGVIGAVLATRVAGLSNDVYFQVGLLTTVGLAAKNAILIVEFAKHLQ-EQGSSVIDATL 961
Query: 939 EAAAIRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCI 998
A RLRP+LMT+ A +FG++PL L++GAG+ R IG + GM T+ +F +P
Sbjct: 962 VAVRQRLRPILMTSLAFMFGVLPLALSTGAGSAGRQAIGTGVLGGMFSATVLGIFFVPLF 1021
Query: 999 YTLL 1002
+ L+
Sbjct: 1022 FVLI 1025
Score = 57.0 bits (136), Expect = 7e-12
Identities = 68/318 (21%), Positives = 132/318 (41%), Gaps = 23/318 (7%)
Query: 184 MRLWLDPVKLAGFGLSATDVTNAVRR------YNFLSAAGEVKGEYVVTSVNASTELKSA 237
+++ +D K LS +D+ + + N G VK YV AS+ +++A
Sbjct: 724 LKVSIDDRKAGALSLSTSDINSTLATALGGTYVNDFLNQGRVKKVYV--QGQASSRMQAA 781
Query: 238 EAFAALPLKTSGDSRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIK 297
+ ++ S + V A G + + ++G S+ I P + D +
Sbjct: 782 DLDHWF-VRNSNNEMVPFSSFASSTWGYGS-PLLERYNGNASLEIVGDPAPGVSSGDAMA 839
Query: 298 EVRRIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGAL-R 356
V I+ QLP + + + ++ S + G +VL V FL L AL
Sbjct: 840 AVEAIV----RQLPQGIGYEWTGQSYQ-LRLSGSQAPLLYGISVLFV----FLCLAALYE 890
Query: 357 SVLIP---VVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHM 413
S +P ++ +PL +IG + ++ G S ++ + ++ +GL +AI++VE
Sbjct: 891 SWSVPFSVILVVPLGVIGAVLATRVAGLSNDVYFQVGLLTTVGLAAKNAILIVEFAKHLQ 950
Query: 414 EEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIIS 473
E+G S DA L R+ P++ ++ P+ TG A + + G + +
Sbjct: 951 EQGSSVIDATLVAVRQRLRPILMTSLAFMFGVLPLALSTGAGSAGRQAIGTGVLGGMFSA 1010
Query: 474 GIVALTLSPMMCALLLRR 491
++ + P+ L+ R
Sbjct: 1011 TVLGIFFVPLFFVLIRGR 1028