Pairwise Alignments

Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1045 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  530 bits (1365), Expect = e-154
 Identities = 331/1041 (31%), Positives = 575/1041 (55%), Gaps = 45/1041 (4%)

Query: 7    FIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQGYITQP 66
            FI RP+ A V++++I+L G  +   L + QYP +    +++   Y GA+A+TI+  +TQ 
Sbjct: 5    FIDRPIFAWVIAIVIMLAGALSIGTLPLEQYPDIAPTKVSINATYTGASAKTIEDSVTQV 64

Query: 67   LQQSLASAEGIDYMTSVSRQNFSI----ISIYARIGADSDRLFTELLAKANEVRNKLPQD 122
            ++Q +   +G+D + S+S  + S     I +    G ++D    ++  K  + +++LPQ 
Sbjct: 65   IEQKM---KGLDRLVSMSSSSTSSGTARIELTFEAGTNADVAQMQVQNKLQQAQSQLPQS 121

Query: 123  SEDPVLSKEAADASALMYVSFYSKEMSNP--QITDYLSRVIQPKLATLPGMAEAEILGNQ 180
             +   ++   +    LM VS  S++ S     I DY+S  +   ++ + G+ + + LG+ 
Sbjct: 122  VQSQGVTVTKSGTDFLMIVSLISQDGSATATDIGDYISSSLLDVISRIDGVGDVQTLGSG 181

Query: 181  VFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEV------KGEYVVTSVNASTEL 234
             +AMR+WLDP KL  + L  +DV++A+   N   +AG++       G+ +  ++ A ++L
Sbjct: 182  -YAMRIWLDPAKLQKYSLMPSDVSSALTSQNTEVSAGQLGALPATAGQRLTATITARSKL 240

Query: 235  KSAEAFAALPLKTSGDSRVL--LGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANP 292
            ++A+ F  + +K+   S  +  LGDVAR+E+G+E+Y   S FDG PS  +G+K    AN 
Sbjct: 241  RTADQFREVIVKSDSSSGAIVRLGDVARIELGSESYTINSHFDGHPSAGMGVKLATGANA 300

Query: 293  LDVIKEVRRIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFL 352
            L V   V+  + EL    P+ +   + YD T F++ SI+EV KTL EA+++V+++++LFL
Sbjct: 301  LTVSNAVKAKLAELSPFFPNQMKAVVGYDTTPFVRISIEEVAKTLAEAMVLVVLIMYLFL 360

Query: 353  GALRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRH 412
              LR+ L+P + +P+ ++G    + ++GYS+N LT+  MVLAIGL+VDDAIVVVEN+ R 
Sbjct: 361  QNLRATLVPAIAVPVVLLGTFGVLSLLGYSINTLTMFGMVLAIGLLVDDAIVVVENVERL 420

Query: 413  M-EEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVI 471
            M EEG SP +A  +   EI   +V + + L+AV+ P+ F  G TG ++++F++T+  A++
Sbjct: 421  MTEEGLSPKEATRKSMSEITGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSVTIVAAML 480

Query: 472  ISGIVALTLSPMMCALLLR-----REQNPSGLAHRLDQLFERLKGRYQR----LLHATLD 522
            +S +VALTLSP +CA LL+       +   G     ++ FER   RY+     LLH    
Sbjct: 481  LSVLVALTLSPALCATLLKPVQAGHHEEKRGFFGWFNRTFERNAERYRSGVGGLLHR--- 537

Query: 523  SRPVVLVFAVIILCLIPVLLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTP 582
             +  +LV+A+++  L    ++   + L P+EDQG +      P  A  + L      F  
Sbjct: 538  GKRSLLVYALLVGVLGMTFMRLPTSFL-PDEDQGTLMAQVKLPASATDEQLQQTMKSFEQ 596

Query: 583  LFKAFPEYYSSFQINGFNGVQ-TGIGGFLLKPWNERERTQMELLPLVQAKLEEI----SG 637
               +  E      + G +G Q TG     LK W ER     +   L +    ++    S 
Sbjct: 597  YLSSQKEVSHYITLTGLSGDQATGNAFITLKDWRERGGKAQDAASLARRFTMDMATRASN 656

Query: 638  LQIFGFNLPSLPGTGEGLPFQFVINTAG--DYPALLDVAQRIKTRAQESGKFAFLDIDLA 695
              +F    P++ G G    F   +   G   + AL+   ++    A++    + +  +  
Sbjct: 657  ANVFVMLPPAVRGLGSNAGFDVQLQDLGGIGHEALVQAREQFLALARKDPALSQVRSNNL 716

Query: 696  FDKPEVVVDIDRAKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRD 755
             D P+  +DID  KAA + +S   +  TL++ +G + +N F   GR  KV  Q + P+R 
Sbjct: 717  DDTPQFSIDIDDRKAAALNLSTSDINDTLSSAMGGSYVNDFINNGRVKKVYVQADAPFRM 776

Query: 756  NPGWLNNYYVKNDQGQLLPLSTLITLTDRARPRQLNQFQQLNAAIIQGVPM--VSLGEAL 813
             P  ++ ++V+N   +++P S   +        QL+++  +++  + G P   VS G A+
Sbjct: 777  QPDSVDRWHVRNANSEMVPFSAFASSRWTYGSPQLSRYNGMSSFELIGDPAAGVSSGTAM 836

Query: 814  KTVQDIAREEAPEGFAFDYAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLV 873
              V+ I + + P+G  +++AG++ Q    GS   + + +++  +FL LAA +ES+  P  
Sbjct: 837  DAVERIMK-QLPQGIGYEWAGSSYQERLSGSQAPLLYAVSILFVFLCLAALYESWSVPFS 895

Query: 874  ILVTVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSV 933
            +++ VPL + GA+L   L   S ++Y QVGL+  +GL +K+ ILIVEFA QL+DE G+++
Sbjct: 896  VMLVVPLGVLGAVLATKLAGLSNDVYFQVGLLATVGLSAKNAILIVEFAKQLQDE-GMAL 954

Query: 934  REAIEEAAAIRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLF 993
             EA  +A  +RLRP+LMT+ A +FG++PL L++GAG+ SR  IG+ +  G++  T+  +F
Sbjct: 955  VEATLQAVRLRLRPILMTSLAFMFGVLPLALSTGAGSGSRRAIGVGVLGGIATATVLGIF 1014

Query: 994  VLPCIYTLLAH--KASAKAPA 1012
             +P  +  +        KAPA
Sbjct: 1015 FVPLFFVAIRRFFAQRKKAPA 1035