Pairwise Alignments

Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1028 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  972 bits (2512), Expect = 0.0
 Identities = 501/1003 (49%), Positives = 696/1003 (69%), Gaps = 3/1003 (0%)

Query: 1    MAFTDTFIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQ 60
            M FTD FI+RPVLA VVSLLI++LG +A   L + QYP+ EN ++T+TTAY GA+A T+ 
Sbjct: 1    MNFTDIFIRRPVLAMVVSLLIVVLGLRALAGLPVNQYPKTENGVVTITTAYYGADAATVA 60

Query: 61   GYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLP 120
            G+ITQPL+ +++ A+GIDY++S S    S I+   R+  DS+R  TE+  + N VRN+LP
Sbjct: 61   GFITQPLEAAVSQAQGIDYLSSSSSLGVSTITATLRLNYDSNRALTEINTQVNSVRNQLP 120

Query: 121  QDSEDPVLSKEAADASALMYVSFYSKEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180
              ++ PVL+      +  MY+ FYS  + N  +TD+L RV+QPKL  +PG+  AEILG +
Sbjct: 121  PQAQQPVLTVATGQTTDAMYIGFYSDTLPNNNVTDFLVRVVQPKLNAIPGVQTAEILGAR 180

Query: 181  VFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAF 240
             FA+R WLD  K+A FG++ATDV+ A+   N+L+A G+ KG+ V   + A T L S + F
Sbjct: 181  TFALRAWLDAQKMAAFGVTATDVSAALAANNYLAAVGQSKGQMVSVPLTAGTSLHSVDEF 240

Query: 241  AALPLKTSGDSRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVR 300
              L +K+S  + V L DVA V +G+ENYD   +F+G  SV+IGIK  P AN LDV K+VR
Sbjct: 241  KQLSIKSSNGAIVRLQDVANVTLGSENYDFNVAFNGVRSVFIGIKVAPEANILDVAKQVR 300

Query: 301  RIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVLI 360
               P+L+SQLPS L   I YD+T FI  SI EVIKTL EA++IV VV++LFLG+ R+V++
Sbjct: 301  TTFPDLQSQLPSGLTGKIVYDSTDFINTSISEVIKTLVEALVIVTVVIYLFLGSFRAVVV 360

Query: 361  PVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPF 420
            PV+ +PLS+IG  F M ++GYS+NLLTLLA+VLAIGLVVDDAI+VVEN+ RHM EGKSP 
Sbjct: 361  PVIAMPLSLIGTFFIMLVLGYSINLLTLLALVLAIGLVVDDAIIVVENVDRHMREGKSPM 420

Query: 421  DAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTL 480
             A+L  ARE+  P+++MT+ L AVY PIGF  GLTG+LF EFA TLAG+V++SGIVALTL
Sbjct: 421  QASLLAARELGGPILAMTVVLVAVYVPIGFQGGLTGSLFTEFAFTLAGSVVVSGIVALTL 480

Query: 481  SPMMCALLLRREQNPSGLAHRLDQLFERLKGRYQRLLHATLDSRPVVLVFAVIILCLIPV 540
            SPMMC+   + EQ+    A  ++  FER+  RYQ +L + L + PV++V  VI++ L+ V
Sbjct: 481  SPMMCSRFFKPEQDTGKFATFIEHTFERVHRRYQLILRSVLKTWPVMIVMGVILVALLFV 540

Query: 541  LLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTPLFKAFPEYYSSFQINGFN 600
            + K +++ELAP EDQG++         A ++ +  Y DQ   +    PEY   FQ+ G  
Sbjct: 541  MFKMSKSELAPEEDQGIVLSQVVGAPTATINQIQTYADQIFQIAHDTPEYAQLFQLTGVP 600

Query: 601  GVQTGIGGFLLKPWNERERTQMELLPLVQAKLEEISGLQIFGFNLPSLPGTGEGLPFQFV 660
                GI G LLKPW++R R+  ++   +Q +   I+G ++  F  P+LPG   GLP QFV
Sbjct: 601  STNAGIAGVLLKPWDQRTRSAHDIQTDLQKRWNGIAGAKVVAFQFPALPG-ASGLPVQFV 659

Query: 661  INTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQMGVSMDTL 720
            I T   +  L  +AQ++  +A+  GKF ++D DL  D P+  V +DR K A +G++   +
Sbjct: 660  IKTTEPFENLNTLAQQVMDKARADGKFYYIDADLKIDLPQATVVVDRDKIATLGITQQDV 719

Query: 721  GGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGWLNNYYVKNDQGQLLPLSTLIT 780
            G  +   LG   +N F++ GRSYKVI QV++  R NP  + N+Y+K   G ++P ST+ +
Sbjct: 720  GNAMGAALGGGYVNYFSIAGRSYKVIPQVQQVDRLNPSDVLNFYIKTPNG-VVPASTVAS 778

Query: 781  LTDRARPRQLNQFQQLNAAIIQGVPMVSLGEALKTVQDIAREEAPEGFAFDYAGAARQYV 840
            L    +P  +N FQQLN+  IQGVP  + GE L+ ++ + ++ AP G++ DY+G +RQ+V
Sbjct: 779  LKYSVQPETVNHFQQLNSVTIQGVPSGTQGETLEYLRGVVQQLAPSGYSVDYSGQSRQFV 838

Query: 841  QEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPLFLGVSSMNIYT 900
            QE     +TF  AL I+FL L+AQFESFRDP+VILV+VPL++ GA++ +F G +SMNIYT
Sbjct: 839  QESGNFAITFVFALIIVFLALSAQFESFRDPVVILVSVPLALFGAMIFIFWGFASMNIYT 898

Query: 901  QVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAIEEAAAIRLRPVLMTTAAMVFGMV 960
            QVGLVTL+GLISKHGILIVE AN+L+ ++GLS  +AI EAA  RLRP+LMTTAAMVFG++
Sbjct: 899  QVGLVTLMGLISKHGILIVEVANRLQ-KQGLSKLDAIVEAAGTRLRPILMTTAAMVFGVL 957

Query: 961  PLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLLA 1003
            PL++ASGAGA  R  +G+VI +G+SIGTLFTLFV+P +Y  +A
Sbjct: 958  PLVIASGAGAAGRKAMGIVIFSGLSIGTLFTLFVVPAMYLAIA 1000



 Score = 75.1 bits (183), Expect = 2e-17
 Identities = 74/316 (23%), Positives = 143/316 (45%), Gaps = 25/316 (7%)

Query: 188  LDPVKLAGFGLSATDVTNAVRR------YNFLSAAGEVKGEYVVTSVNASTELKSAEAFA 241
            +D  K+A  G++  DV NA+         N+ S AG  +   V+  V     L  ++   
Sbjct: 704  VDRDKIATLGITQQDVGNAMGAALGGGYVNYFSIAG--RSYKVIPQVQQVDRLNPSDVLN 761

Query: 242  ALPLKTSGDSRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVRR 301
               +KT  +  V    VA ++   +  +TV+ F    SV I  +  P+    + ++ +R 
Sbjct: 762  FY-IKTP-NGVVPASTVASLKYSVQP-ETVNHFQQLNSVTI--QGVPSGTQGETLEYLRG 816

Query: 302  IMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGA----LRS 357
            ++ +L    PS  +V  +  + +F+Q S +  I       +  +++VFL L A     R 
Sbjct: 817  VVQQLA---PSGYSVDYSGQSRQFVQESGNFAI-----TFVFALIIVFLALSAQFESFRD 868

Query: 358  VLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGK 417
             ++ +V++PL++ G + F+     S+N+ T + +V  +GL+    I++VE  +R  ++G 
Sbjct: 869  PVVILVSVPLALFGAMIFIFWGFASMNIYTQVGLVTLMGLISKHGILIVEVANRLQKQGL 928

Query: 418  SPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVA 477
            S  DA +E A     P++  T  +     P+   +G   A  K   + +   + I  +  
Sbjct: 929  SKLDAIVEAAGTRLRPILMTTAAMVFGVLPLVIASGAGAAGRKAMGIVIFSGLSIGTLFT 988

Query: 478  LTLSPMMCALLLRREQ 493
            L + P M   +  R +
Sbjct: 989  LFVVPAMYLAIAARHK 1004