Pairwise Alignments

Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1034 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

 Score =  629 bits (1621), Expect = 0.0
 Identities = 379/1023 (37%), Positives = 583/1023 (56%), Gaps = 30/1023 (2%)

Query: 1    MAFTDTFIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQ 60
            M  +D  ++RPV ++VV++L+ ++G   +  L +R+YP  +  +++V T Y GA A  ++
Sbjct: 1    MQLSDLSVRRPVFSAVVAVLMCIVGLVGYFSLSVREYPDTDPPIVSVETTYTGAAASVVE 60

Query: 61   GYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLP 120
              ITQ ++ ++A  +GI  +TS S+   S I+I      D D    ++  +   V   LP
Sbjct: 61   TRITQQIEDAVAGVQGIQTITSTSQDGTSNINIEFDPSRDIDSAANDVRDRVGSVTQDLP 120

Query: 121  QDSEDPVLSKEAADASALMYVSFYSKEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180
            +D+  P + K  +DA ++++++F     S  QI+DYL R I  + A + G+A   I G  
Sbjct: 121  EDALAPEIRKVDSDARSILFLAFSRPGWSPIQISDYLDRNIADRFAAIDGVARVTIGGEA 180

Query: 181  VFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAF 240
              + R+W +  KLA FGL+  DV  A+R  N    AG  + +    ++       + + F
Sbjct: 181  RPSTRIWFNAEKLAAFGLTPADVEAALRTQNVELPAGRFESKDQNQTLRVERPFATPDQF 240

Query: 241  AALPLKTSGDS-RVLLGDVARVEMGAEN-YDTVSSFDGTPSVYIGIKATPAANPLDVIKE 298
            A L +    D  +V LGDVAR+E GAEN Y +  S  GT ++ IGI     AN L+V ++
Sbjct: 241  AQLVVGRGEDGYQVKLGDVARIEEGAENPYSSFRSNQGT-AIGIGIIRQSGANTLEVAQK 299

Query: 299  VRRIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSV 358
             + ++ ELE  LP  + V+I  D + FI+ +ID V  TL EA L+VI+V+FLFLG++R+ 
Sbjct: 300  AKALIKELEPTLPKGMKVAIGTDESLFIERAIDNVYDTLIEAALLVILVIFLFLGSVRAT 359

Query: 359  LIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKS 418
            ++P VT+P+ ++     M ++G S+NLLTLLA VLAIGLVVDDAIVV+EN++  +E+G  
Sbjct: 360  IVPAVTVPICLLATCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENVYHRVEQGDD 419

Query: 419  PFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVAL 478
            P  AA  G R++   ++S T+ + AV+ P+ FL G TG LF+E A+ +  A+  SG ++L
Sbjct: 420  PLVAAYLGTRQVGFAIISTTLVVCAVFVPVMFLAGQTGLLFRELAIAMIAAIGFSGFISL 479

Query: 479  TLSPMMCALLLRREQNPSGLAHRLDQLFERLKGRYQRLLHATLDSRPVVLVFAVIILCLI 538
            +L+PM+C+ LL+  +    LA  +D  F+R++  Y R L  TL    + L+   I L + 
Sbjct: 480  SLAPMLCSKLLKNAER-GRLARWVDDRFQRIEHGYGRWLDWTLKKPLMPLLGVAIFLGVA 538

Query: 539  PVLLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTPLFKAFPEYYSSFQING 598
              L      ELAP ED GV+    ++P+    D + AY  +      AF     + Q   
Sbjct: 539  FFLFTRLPAELAPAEDTGVVEANVNAPEGTGFDRMMAYMQKIENDL-AFLRKDGTLQ--- 594

Query: 599  FNGVQTGIGGF-------------LLKPWNERERTQMELLPLVQAKLEEISGLQIFGFNL 645
             N V    GGF              L+PW +R  T  E+  ++   + +  G++  G   
Sbjct: 595  -NLVIRTPGGFGTTDDYNNGNVIAFLRPWEDRTITTAEVATIINKVIADQPGVR--GNAA 651

Query: 646  P-SLPGTGEGLPFQFVINTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPEVVVD 704
            P S  G G GLP   V+     Y  L+    RI   A        LD D    KP++ ++
Sbjct: 652  PRSGLGRGRGLPVNIVL-AGSTYEGLVAARDRIMLAAASYPGLINLDSDYKETKPQMRIE 710

Query: 705  IDRAKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGWLNNYY 764
             D  +A  +GVS++ +   L +LLG   +  +   G  Y+V+ Q ER  R     L    
Sbjct: 711  TDLQRAGDLGVSVNDVSQALQSLLGSRRVTTYVDRGEEYRVLVQAERDGRQTLADLERIQ 770

Query: 765  VKNDQGQLLPLSTLITLTDRARPRQLNQFQQLNAAIIQG--VPMVSLGEALKTVQDIARE 822
            V++ +G L+PLS ++T+ + A PRQLN++ +L A  +     P  SLG+ L  ++D AR 
Sbjct: 771  VRSRRGVLVPLSAVVTVREVAGPRQLNRYNKLRAITLTAALAPGTSLGQGLAFLEDQAR- 829

Query: 823  EAPEGFAFDYAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSI 882
            ++PE  A  Y G ++   + G ++W+ FGL + I++L+LAAQFESF  P VI+ TVPL++
Sbjct: 830  QSPEVLAIGYRGESQSLRETGGSIWIVFGLTILIVYLLLAAQFESFIHPGVIIATVPLAV 889

Query: 883  CGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAIEEAAA 942
             G  L L +   S+N+Y+Q+G+V L+GL +K+GILIVEFANQLRDE G+ + EAI EAA 
Sbjct: 890  AGGALGLAITGGSINLYSQIGIVMLVGLAAKNGILIVEFANQLRDE-GMEIAEAIREAAK 948

Query: 943  IRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLL 1002
             RLRP+LMT+ A V G VPL+L  GAGA +R  IG+VI  G+S+ TL TLF++P  Y+ +
Sbjct: 949  RRLRPILMTSIATVIGAVPLVLRGGAGAAARHSIGVVIVFGVSLATLITLFLIPIFYSRV 1008

Query: 1003 AHK 1005
            A +
Sbjct: 1009 AKR 1011



 Score = 64.7 bits (156), Expect = 3e-14
 Identities = 67/337 (19%), Positives = 143/337 (42%), Gaps = 37/337 (10%)

Query: 184  MRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAFAAL 243
            MR+  D  +    G+S  DV+ A++               ++ S   +T +   E +  L
Sbjct: 707  MRIETDLQRAGDLGVSVNDVSQALQS--------------LLGSRRVTTYVDRGEEYRVL 752

Query: 244  PLKTSGDSRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVRRIM 303
             ++   D R  L D+ R+++ +     V       S  + ++       L+   ++R I 
Sbjct: 753  -VQAERDGRQTLADLERIQVRSRRGVLVPL-----SAVVTVREVAGPRQLNRYNKLRAIT 806

Query: 304  PELESQLPSALNVSIAYDATRFIQA---------SIDEVIKTLGEAVLIV----IVVVFL 350
                    ++L   +A+   +  Q+            + ++  G ++ IV    I++V+L
Sbjct: 807  LTAALAPGTSLGQGLAFLEDQARQSPEVLAIGYRGESQSLRETGGSIWIVFGLTILIVYL 866

Query: 351  FLGA-LRSVLIP---VVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVV 406
             L A   S + P   + T+PL++ G    + + G S+NL + + +V+ +GL   + I++V
Sbjct: 867  LLAAQFESFIHPGVIIATVPLAVAGGALGLAITGGSINLYSQIGIVMLVGLAAKNGILIV 926

Query: 407  ENIHRHMEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTL 466
            E  ++  +EG    +A  E A+    P++  +I       P+    G   A      + +
Sbjct: 927  EFANQLRDEGMEIAEAIREAAKRRLRPILMTSIATVIGAVPLVLRGGAGAAARHSIGVVI 986

Query: 467  AGAVIISGIVALTLSPMMCALLLRREQNPSGLAHRLD 503
               V ++ ++ L L P+  + + +R  +P  +  +LD
Sbjct: 987  VFGVSLATLITLFLIPIFYSRVAKRTVSPQTVGRKLD 1023