Pairwise Alignments

Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

 Score =  962 bits (2488), Expect = 0.0
 Identities = 512/1011 (50%), Positives = 696/1011 (68%), Gaps = 5/1011 (0%)

Query: 1    MAFTDTFIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQ 60
            M FTD F++RPVLA VVS LI+L+G  A  KL IRQYP +E++ IT++T YPGA+AE +Q
Sbjct: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60

Query: 61   GYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLP 120
            G++TQP+ Q+++S EGIDY++S S+Q  S+I++   +  DS +   E +AK N+VR +LP
Sbjct: 61   GFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLP 120

Query: 121  QDSEDPVLSKEAADASALMYVSFYSKEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180
            + + DPV+   A D++A+ YV F S  +S P+++DYLSRV++P+ + + G+A+ +  G Q
Sbjct: 121  EKAYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQ 180

Query: 181  VFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAF 240
              AMRLWLD  ++AG G++A DV  AVR  N+ +  G+V+G+YV+  +   T+L   E F
Sbjct: 181  RLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDF 240

Query: 241  AALPLKTSGDSRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVR 300
              L ++  G   V L D+  VE+ A    T ++ DG P+V++G+  TP+ NPL +++ +R
Sbjct: 241  RELIIRNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVIVEGIR 300

Query: 301  RIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVLI 360
            +++P+++  LP  + V++AY+  RFI ASI EV++TL EA+LIV++V++L LG+LRSVLI
Sbjct: 301  QLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLI 360

Query: 361  PVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPF 420
             VV IPLSM+G    M M G+SLNLLTLLAMVLAIGLVVDDAIVVVEN+HRH+EEGKSP 
Sbjct: 361  AVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPI 420

Query: 421  DAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTL 480
             AAL GAREIA PV++MT+TLAAVYAPIG + GLTG LF+EFALTLAGAVI+SGIVALTL
Sbjct: 421  AAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVALTL 480

Query: 481  SPMMCALLLRREQNPSGLAHRLDQLFERLKGRYQRLLHATLDSRPVVLVFAVIILCLIPV 540
            SP+M +LLL+  Q    +A   D+LF  L G Y R+L  TL  R +    A+++   +P 
Sbjct: 481  SPVMSSLLLQPGQQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRWISGGVALLVCLSLPW 540

Query: 541  LLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTPLFKAFPEYYSSFQINGFN 600
            L    Q ELAP EDQ  +     SPQ A+L+Y   +  +   + K+  E   ++ ING +
Sbjct: 541  LYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSIAETTDTWIINGTD 600

Query: 601  GVQTGIGGFLLKPWNERERTQMELLPLVQAKLEEISGLQIFGFNLPSLPGTGEGLPFQFV 660
            G     GG  L  W  RER+  ++   +Q  + +I G  IF F + SLPG+  GLP Q V
Sbjct: 601  GPAASFGGINLSAWQARERSAAQVQAQLQQAVADIEGSSIFAFQVASLPGSSGGLPVQMV 660

Query: 661  INTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQMGVSMDTL 720
            + +A DYP L    + +K RA++SG FA +D DL ++ P V V +DRAKAA +G+SM  +
Sbjct: 661  LRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRVDRAKAASLGISMQAI 720

Query: 721  GGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGWLNNYYVKNDQGQLLPLSTLIT 780
            G +L  L+GE  +NRF L GRSY VI Q  +  R  P  L+  YV+ + G L+PL+TL+ 
Sbjct: 721  GESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLTPAALSRQYVRAEDGSLVPLATLVR 780

Query: 781  LTDRARPRQLNQFQQLNAAIIQGVPM--VSLGEALKTVQDIAREEAPEGFAFDYAGAARQ 838
            L     P +L QF Q NA+ +Q +P   VS+G A+  ++ +   E P GF+ D+   +RQ
Sbjct: 781  LDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLT-AELPPGFSHDWQSESRQ 839

Query: 839  YVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPLFLGVSSMNI 898
            YVQEG AL   F  AL +I+LVLAAQ+ES  DPL+ILVTVPLSICGALLPL LG +++NI
Sbjct: 840  YVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICGALLPLALGWATLNI 899

Query: 899  YTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAIEEAAAIRLRPVLMTTAAMVFG 958
            YTQ+GLVTLIGLISKHGIL+V FAN+++    L    AI  AA IRLRPVLMTTAAM FG
Sbjct: 900  YTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIRLRPVLMTTAAMTFG 959

Query: 959  MVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLLA--HKAS 1007
            ++PL+ ASGAGA SRF +G+VI  GM +GTLFTLFVLP IY  LA  H+ S
Sbjct: 960  VLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWLARDHRVS 1010