Pairwise Alignments

Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1042 a.a., The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  542 bits (1396), Expect = e-158
 Identities = 335/1020 (32%), Positives = 556/1020 (54%), Gaps = 31/1020 (3%)

Query: 16   VVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQGYITQPLQQSLASAE 75
            V+SL  +LLG   +  L +  +P +    +++   Y GAN+E +   +T PL++++    
Sbjct: 2    VISLFFVLLGALTFFSLPVALFPDIAPPAVSIRAKYRGANSEVVAKTVTTPLEKAINGVP 61

Query: 76   GIDYMTSVS-RQNFSIISIYARIGADSDRLFTELLAKANEVRNKLPQDSEDPVLSKEAAD 134
            G+ YM+SVS  +  S I +Y       D    E+  + + V N LPQD     ++ E   
Sbjct: 62   GMMYMSSVSSNRGTSKIKVYFGAETSPDEAAMEVQNRVSTVVNDLPQDVIKAGVTVEKEV 121

Query: 135  ASALMYVSFYSKEMSNPQ--ITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVK 192
               L+Y++    + S  +  I ++    +  +L  + G+  AEI+  + ++MR+WL P +
Sbjct: 122  EGLLLYINVMGSDPSMDEQFIYNFSDLNVLQELRRVDGVGFAEIMSTKDYSMRIWLKPDR 181

Query: 193  LAGFGLSATDVTNAVRRYNFLSAAGEV-----KGEYVVT-SVNASTELKSAEAFAALPLK 246
            +  + +S  +V  A+   N  +A G+V     KG  ++   +  S +   A+ +  L ++
Sbjct: 182  MTAYQVSTDEVKAALNNQNVEAAPGQVGVSSGKGAQMIQYGLRYSGKFNEAKEYENLVIR 241

Query: 247  TSGDSRVL-LGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVRRIMPE 305
             + D  +L LGD+A VE G+ NY  +S  DG P+  I I   P +N  DVI+ V++ M E
Sbjct: 242  ANKDGSILRLGDIADVEFGSLNYGRISKTDGKPAASIMIIQRPGSNARDVIQRVKKRMEE 301

Query: 306  L-ESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVLIPVVT 364
            L +   P  ++  I YD +RF+ ASI EV+KTL EA ++V +VVF+FL   RS LIP + 
Sbjct: 302  LKQGSFPPGVDYKITYDVSRFLDASIHEVLKTLIEAFILVFLVVFIFLQDFRSTLIPALA 361

Query: 365  IPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGK-SPFDAA 423
            +P+++IG LFFMQ+ G+S+N+LTL A+VLAIG+VVD+AIVVVE +H  MEE    P +A 
Sbjct: 362  VPVALIGTLFFMQLFGFSINMLTLFALVLAIGIVVDNAIVVVEAVHAKMEEDHLPPMEAT 421

Query: 424  LEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPM 483
            L   ++I   +VS+T+ ++AV+ P+ FL G  G  +++F++TLA A++ISGI ALTL+P 
Sbjct: 422  LAAMKDIGGAIVSITLVMSAVFIPVAFLDGPVGIFYRQFSITLAIAIVISGINALTLTPA 481

Query: 484  MCALLLRR----EQNPSGL---AHRLDQLFERLKGRYQRLLHATLDSRPVVLVFAVIILC 536
            +CA++L+     EQ  + L    +  ++ +E   G+Y+  L   +  R V ++  V    
Sbjct: 482  LCAIILKNHYGTEQKKTLLNTFFNGFNRAYESFSGKYRNTLGVLVGRRLVTVIMLVAFFI 541

Query: 537  LIPVLLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTPLFKAFPEYYSSFQI 596
                + K   +   P EDQ ++++   SP  A ++      D      +   E  +   +
Sbjct: 542  GTWGVAKVLPSGFIPVEDQSMVYINVVSPSGATVERTEKVLDHIQQAAEELDEVAAVSTL 601

Query: 597  NGF------NGVQTGIGGFLLKPWNERERTQMELLPLVQAKLEEISGLQIFGFNLPSLPG 650
             G+      +G   G+G   LK W+ERE +  E +  + A+  +IS  Q+  F  P++ G
Sbjct: 602  AGYSLSTGLSGASYGMGMINLKNWDEREASIQETIDELYARTADISDAQVQFFLPPTVSG 661

Query: 651  TGEGLPFQFVI---NTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPEVVVDIDR 707
             G    FQ  +     +G+   L  V +        + +   +  D   + P+ +V++D+
Sbjct: 662  FGNSSGFQMKVLDQTGSGNLQKLSLVIEDFVEALDNAPEIGEVKSDFDPNFPQYMVNVDQ 721

Query: 708  AKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGWLNNYYVKN 767
              AA+ GV++     TL  L+G    + F      Y V+ Q    YR NP  +   +VKN
Sbjct: 722  DMAAKKGVTISNAMSTLQILMGGVLASDFVRFENMYDVMMQAGPQYRANPEDVLKVHVKN 781

Query: 768  DQGQLLPLSTLITLTDRARPRQLNQFQQLNAAIIQGVPM--VSLGEALKTVQDIAREEAP 825
            D G+++P+S+ I L     P QL++     +A ++G+P    S G+A+  +Q +A E+ P
Sbjct: 782  DGGEMVPISSFINLEKVYGPEQLSKHNMYTSAKVKGIPAPGYSSGDAVAAIQRVAAEKLP 841

Query: 826  EGFAFDYAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSICGA 885
            +G+ +D+ G  RQ V  G+     F + L  ++L+LAAQ+ESF  PL +++ +P  + G+
Sbjct: 842  KGYGYDWYGMTRQEVSSGNQAIYIFIICLVFVYLLLAAQYESFVLPLPVILFLPAGVFGS 901

Query: 886  LLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAIEEAAAIRL 945
               L+L     NIY QV L+ LIGL+ K+ ILI+EFA  L+ + G+ +  A    A  RL
Sbjct: 902  FAALYLLGLQNNIYAQVALIMLIGLLGKNAILIIEFA-VLKRKEGMDIIPAAITGAVSRL 960

Query: 946  RPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLLAHK 1005
            RP+LMT+ A + G+VPL +A+GAGA+    IG     GM  GT+F +F++P +Y L + +
Sbjct: 961  RPILMTSFAFMAGLVPLCMATGAGALGNRSIGTAALGGMFSGTVFGMFLIPGLYVLFSSR 1020



 Score = 55.8 bits (133), Expect = 1e-11
 Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 30/236 (12%)

Query: 283  GIKATPAANPLDVIKEVRRIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVL 342
            GI A P  +  D +  ++R+  E   +LP        Y  TR   +S ++ I       +
Sbjct: 817  GIPA-PGYSSGDAVAAIQRVAAE---KLPKGYGYDW-YGMTRQEVSSGNQAIYIF----I 867

Query: 343  IVIVVVFLFLGA-LRSVLIP---VVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLV 398
            I +V V+L L A   S ++P   ++ +P  + G    + ++G   N+   +A+++ IGL+
Sbjct: 868  ICLVFVYLLLAAQYESFVLPLPVILFLPAGVFGSFAALYLLGLQNNIYAQVALIMLIGLL 927

Query: 399  VDDAIVVVENIHRHMEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGL---- 454
              +AI+++E      +EG     AA+ GA     P++  +    A   P+   TG     
Sbjct: 928  GKNAILIIEFAVLKRKEGMDIIPAAITGAVSRLRPILMTSFAFMAGLVPLCMATGAGALG 987

Query: 455  -----TGALFKEFALTLAGAVIISGIVALTLSPMMCALLLRREQNPSGLAHRLDQL 505
                 T AL   F+ T+ G  +I G+  L  S        RR++N + + ++++ +
Sbjct: 988  NRSIGTAALGGMFSGTVFGMFLIPGLYVLFSS--------RRKKNKTKMKNKVENI 1035