Pairwise Alignments

Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1037 a.a., aminoglycoside/multidrug efflux system from Escherichia coli BL21

 Score =  526 bits (1355), Expect = e-153
 Identities = 327/1035 (31%), Positives = 557/1035 (53%), Gaps = 38/1035 (3%)

Query: 7    FIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQGYITQP 66
            FI RP+ A V+++L+ L G  A   L + QYP +    + VT  YPGA+A+T++  +TQ 
Sbjct: 5    FIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENTVTQV 64

Query: 67   LQQSLASAEGIDYMTSVSR-QNFSIISIYARIGADSDRLFTELLAKANEVRNKLPQDSED 125
            ++Q++   + + YM+S S     + +++  + G D D    ++  +      KLPQ  ++
Sbjct: 65   IEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQAVQN 124

Query: 126  PVLSKEAADASALMYVSFYSKE--MSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFA 183
              ++      + ++ ++F S +  M    I DY++  IQ  L+ + G+ + +  G+Q ++
Sbjct: 125  QGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQ-YS 183

Query: 184  MRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVV------TSVNASTELKSA 237
            MR+WLDP KL  F ++A DVT+A+   N   A G++ G   V       ++NA + L++ 
Sbjct: 184  MRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLLQTP 243

Query: 238  EAFAALPLKTSGD-SRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVI 296
            E F  + L+ + D S V LGDVA VEMGAE YD +S F+G P+  +G+K    AN +   
Sbjct: 244  EQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATA 303

Query: 297  KEVRRIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALR 356
            + V   + EL    P  L   +AY+ T F++ASI++V+KTL EA+ +V +V++LFL   R
Sbjct: 304  ELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFR 363

Query: 357  SVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHM-EE 415
            + LIP + +P+ ++G    +   GYS+N LT+ AMVLAIGL+VDDAIVVVEN+ R M EE
Sbjct: 364  ATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERIMSEE 423

Query: 416  GKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGI 475
            G +P +A  +   +I   +V + + L+AV+ P+ F  G TGA++++F++T+  A+++S +
Sbjct: 424  GLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVL 483

Query: 476  VALTLSPMMCALLLR-----REQNPSGLAHRLDQLFERLKGRYQRLLHATLDSRPVVLVF 530
            VA+ L+P +CA LL+           G     +Q+F R   RY++ +   L      +V 
Sbjct: 484  VAMILTPALCATLLKPLKKGEHHGQKGFFAWFNQMFNRNAERYEKGVAKILHRSLRWIVI 543

Query: 531  AVIILCLIPVLLKFTQNELAPNEDQGV----IFMMSSSPQPANLDYLNA-----YTDQFT 581
             V++L  +  L         P ED+G+    + + S S Q   L  +       +T +  
Sbjct: 544  YVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFTHEKD 603

Query: 582  PLFKAFPEYYSSFQINGFNGVQTGIGGFLLKPWNERER---TQMELLPLVQAKLEEISGL 638
             +   F    S    NG N  +  I    LK W+ER+    T   ++        +I   
Sbjct: 604  NIMSVFATVGSGPGGNGQNVARMFI---RLKDWSERDSKTGTSFAIIERATKAFNQIKEA 660

Query: 639  QIFGFNLPSLPGTGEGLPFQFVI--NTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAF 696
            ++   + P++ G G    F   +  +    + AL+    ++   A E+ +   +  +   
Sbjct: 661  RVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALAAENPELTRVRHNGLD 720

Query: 697  DKPEVVVDIDRAKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDN 756
            D P++ +DID+ KA  +GV++D +  TL T  G + +N F   GR  KV  Q   PYR  
Sbjct: 721  DSPQLQIDIDQRKAQALGVAIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRML 780

Query: 757  PGWLNNYYVKNDQGQLLPLSTLITLTDRARPRQLNQFQQLNAAIIQG--VPMVSLGEALK 814
            P  +N +YV+N  G ++P S   T        +L ++   +A  I G   P VS G A+ 
Sbjct: 781  PDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMD 840

Query: 815  TVQDIAREEAPEGFAFDYAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVI 874
             ++ + + + P GF  ++   + Q    G+     + ++L ++FL LAA +ES+  P  +
Sbjct: 841  IMESLVK-QLPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSV 899

Query: 875  LVTVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVR 934
            ++ VPL + GALL  ++     ++Y QVGL+T+IGL +K+ ILIVEFAN++ +++G  + 
Sbjct: 900  MLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEM-NQKGHDLF 958

Query: 935  EAIEEAAAIRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFV 994
            EA   A   RLRP+LMT+ A +FG++P+  ++GAG+  +  +G  +  GM   T+  ++ 
Sbjct: 959  EATLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYF 1018

Query: 995  LPCIYTLLAHKASAK 1009
            +P  + L+  +   K
Sbjct: 1019 VPLFFVLVRRRFPLK 1033