Pairwise Alignments

Query, 227 a.a., DNA-binding response regulator from Pseudomonas putida KT2440

Subject, 235 a.a., response regulator in two-component regulatory system with PhoQ from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  160 bits (406), Expect = 1e-44
 Identities = 98/223 (43%), Positives = 138/223 (61%), Gaps = 4/223 (1%)

Query: 2   RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPG-IDGY 60
           R L+VED+ D    +A+     G+ V   +DG+  L  A +E +DLI+LD MLP  +DG 
Sbjct: 8   RCLVVEDDADNARYIANGFRALGHVVVICRDGMEALGRATSEPWDLIILDRMLPNEVDGL 67

Query: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120
           ++   LR   ++ TPV++L+A   LD+R++G ++G DDYL KPFA SELAAR EA++RR+
Sbjct: 68  SILSTLRGLGKK-TPVLVLSALSALDERVRGLKAGGDDYLTKPFAFSELAARAEALVRRS 126

Query: 121 QGGGR-RTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLAVLMQKSPHVLRREVLEEAL 179
           + G   RTLQVADL  DL +  V R GR + L P   +LLA LM     VL R +L EA+
Sbjct: 127 RPGPPIRTLQVADLKLDLASRHVERGGRPVALQPREFRLLAYLMSHPGQVLTRTMLLEAV 186

Query: 180 WGDDC-PDSDSLRSHVHQLRQVIDKPFEKPLLHTVHGVGYRLA 221
           W     P ++ +   V +LR  +D     PL+HTV G+GYR+A
Sbjct: 187 WDYQFDPQTNVIDVQVSRLRGKLDAGGAPPLIHTVRGIGYRIA 229