Pairwise Alignments

Query, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  778 bits (2008), Expect = 0.0
 Identities = 370/541 (68%), Positives = 442/541 (81%), Gaps = 8/541 (1%)

Query: 1   MLKHAVIPFLLGAGLLSGAPSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNR 60
           M + A+ P LL AGLL+  P A AAS LV+CSE SPAGFDP QYT+GTDFDASAETVFNR
Sbjct: 1   MERIALKPLLLAAGLLACMPLAQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNR 60

Query: 61  LTQFERGGTAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFN 120
           LTQF+RGGT V PGLAT W++S DG TYTFHLR+GVKFHTTD+F P+R FNADDVLFTFN
Sbjct: 61  LTQFKRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFN 120

Query: 121 RMLDKDNPFRKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFA 180
           R+LD  +PFR+AYP+E PYFTDMG++  I  V+KLD+HTV+F LN VDA+F+QNLAMSFA
Sbjct: 121 RLLDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFA 180

Query: 181 SIQSAEYADQLLKNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNL 240
           S+QSAEYA QLLK GKA +INQKP+GTGPFVF +YQKD+QIR+  NK YW+PEDVK+DNL
Sbjct: 181 SVQSAEYAAQLLKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKLDNL 240

Query: 241 IFAITTDASVRMQKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYNVMDK 300
           +FAIT DA+ R+QKLK  ECQV+ +PRPADIE +K D NL + QQAGFNLG++AYNV   
Sbjct: 241 VFAITPDAASRLQKLKAGECQVSGYPRPADIEVMKQDPNLHVLQQAGFNLGFLAYNVTHP 300

Query: 301 IKGSNEANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSIKDAAF 360
                   P+ QLKVRQALDMA+DK  II++VYQ AGQLA NA+PP QWSYD +IKDA +
Sbjct: 301 --------PLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSYDPTIKDAPY 352

Query: 361 DPEKAKQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEW 420
           DP KAK LLKEAG+  GT + LWAM VQR  NPNA++ A+M+Q DW K+GIKA IVSYEW
Sbjct: 353 DPTKAKALLKEAGVAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGIKANIVSYEW 412

Query: 421 GEYIKRSKGGEQGAMLIGWSGDNGDPDNWLGTLYGCDAVDGNNFSKWCYKPYDDLIKQAK 480
           GEYIKR+K GE  AM+ GW+GDNGDPDNWLG LY C AV G+N++KWC   YD L++QAK
Sbjct: 413 GEYIKRAKNGEHDAMIYGWTGDNGDPDNWLGVLYSCAAVKGSNYAKWCNPAYDKLVQQAK 472

Query: 481 ATSDQAKRTELYQKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKISPFALNSFYGVSVD 540
            ++D+ +R + YQ+AQ ILKEQVPITPIA+STV+QP+  +VKDFKISPF L  FYGVS+D
Sbjct: 473 VSNDREQRIKWYQQAQKILKEQVPITPIANSTVFQPLRKEVKDFKISPFGLTPFYGVSLD 532

Query: 541 K 541
           K
Sbjct: 533 K 533