Pairwise Alignments

Query, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 532 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  477 bits (1228), Expect = e-139
 Identities = 249/527 (47%), Positives = 339/527 (64%), Gaps = 13/527 (2%)

Query: 11  LGAGLLSGAPSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNRLTQFERGGTA 70
           + A LLS A   V+A  LV C+E SP GFDP  YTT    DA+AET+FNRL  F+ G T 
Sbjct: 10  MAAALLSVA-IGVSAKPLVVCTEASPEGFDPVLYTTAVTADAAAETMFNRLVDFKPGTTE 68

Query: 71  VIPGLATKW-EVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDKDNPF 129
           V+P LA    E+S DG TYTFHLR+ +KFHTTDYFKP+R  NADDVL++F R LD ++P+
Sbjct: 69  VVPALAKDLPEISADGLTYTFHLRDDIKFHTTDYFKPTRNMNADDVLWSFQRQLDPNHPW 128

Query: 130 RKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFASIQSAEYAD 189
            K     +PYF  MG  + +  VEK D+HTV FTL   +A F+ +L M+F+SI S EYAD
Sbjct: 129 HKKSLVGYPYFESMGFKELLKSVEKTDDHTVVFTLTRPEAPFLADLGMAFSSIHSKEYAD 188

Query: 190 QLLKNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFAITTDAS 249
           QLLK+GK  D+N KPIGTGPFVF++YQKDAQ RFK N DY++ +   +D LI AI+TD +
Sbjct: 189 QLLKSGKTEDLNAKPIGTGPFVFTRYQKDAQARFKANPDYFRGKPA-VDPLILAISTDNN 247

Query: 250 VRMQKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYNVMDKIKGSNEANP 309
           VR+QKLK NECQ+ LFP+P DI  +K D NL++ + A     Y A N   K         
Sbjct: 248 VRLQKLKANECQIALFPKPDDIPSIKKDPNLKVDELAAMTTSYTALNTTHKY-------- 299

Query: 310 MAQLKVRQALDMAVDKKKIIESVY-QGAGQLAVNAMPPTQWSYDDSIKDAAFDPEKAKQL 368
           M+  +VR A+++A DK    E+++ +G   +     PPT   +++ +K+   D +KA+ L
Sbjct: 300 MSDARVRHAINIAFDKAGYTEALFGKGNAVVGTGPYPPTLLGFNEKLKNPPRDLDKARAL 359

Query: 369 LKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGEYIKRSK 428
           LKEAG+ EGTE TL+      P NPN  L A+ +Q+D A+IG+K  I   EWGE +KR+K
Sbjct: 360 LKEAGVPEGTEFTLFTRNGGGPTNPNPMLGAQRMQADLAQIGLKVNIKVMEWGEMLKRAK 419

Query: 429 GGEQGAMLIGWSGDNGDPDNWLGTLYGCDAV-DGNNFSKWCYKPYDDLIKQAKATSDQAK 487
            GE   +  GW GDNGDPDN+L     CDA  +G N+++WC K + DLI +A+A ++ A+
Sbjct: 420 NGEHDMVSAGWVGDNGDPDNFLTPNLSCDAAKNGENYARWCNKEFQDLIDKARAIAEPAQ 479

Query: 488 RTELYQKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKISPFALNSF 534
           R  LY++AQ +  +  P  P+A+  ++  M   V+ F  SP   N+F
Sbjct: 480 RAALYEQAQDVFDKDQPWLPMAYPKLFTAMRKNVEGFTQSPLGTNNF 526