Pairwise Alignments

Query, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 530 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  449 bits (1156), Expect = e-131
 Identities = 232/539 (43%), Positives = 335/539 (62%), Gaps = 12/539 (2%)

Query: 2   LKHAVIPFLLGAGLLSGAPSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNRL 61
           ++ A +P LL    +  AP A AASNL  C+E SP GFD  QY + T  +ASA+ + NRL
Sbjct: 1   MRLAALPLLLAPLFI--APLASAASNLSVCTEASPEGFDVVQYNSLTTTNASADVLMNRL 58

Query: 62  TQFERGGTAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNR 121
             ++     ++P LA  WEVS DG TYTF L   VKFH T+YF PSR   A+DV F+F R
Sbjct: 59  VDYDAASGKLVPSLADSWEVSPDGLTYTFKLHPDVKFHRTEYFTPSRTLTAEDVRFSFER 118

Query: 122 MLDKDNPFRKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFAS 181
           MLD  NP+ K   + FP+   + +   + K++ LD  TV+FTL+  D+ F+  L+M FAS
Sbjct: 119 MLDPANPWHKIAQSGFPHAQSLQLPTLVKKIDALDPLTVRFTLDHADSTFLAALSMGFAS 178

Query: 182 IQSAEYADQLLKNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLI 241
           I  AEYA++LLK G    +N +PIGTGPF+FS++QKDA +R+K N +Y+  +   +DNLI
Sbjct: 179 IYPAEYAEKLLKAGTPEKLNSQPIGTGPFIFSRFQKDAVVRYKANPNYFAGKP-PVDNLI 237

Query: 242 FAITTDASVRMQKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYNVMDKI 301
           FAIT DA+VR+QKL ++ECQ+ L P+P D+   + D  L++ + A F   ++A N     
Sbjct: 238 FAITPDANVRLQKLHRDECQIALSPKPLDVGEAEKDPALKVEKTAAFMTAFLAIN----- 292

Query: 302 KGSNEANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSIKDAAFD 361
              ++  P+ + +VRQA+++A DK   +++V++G  + A    PP  WSY   +     D
Sbjct: 293 ---SQHPPLDKPEVRQAINLAFDKGSYLKAVFEGTAEAANGPYPPNTWSYAKDLPGYPQD 349

Query: 362 PEKAKQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWG 421
             KAK LL  AG+K+G + T+W  P     NPN  L A++LQ+D AK+GI+A+I   EWG
Sbjct: 350 LAKAKALLDRAGLKDGFKTTIWTRPTGSLLNPNPNLGAQLLQADLAKVGIQAEIRVIEWG 409

Query: 422 EYIKRSKGGEQGAMLIGWSGDNGDPDNWLGTLYGCDAV-DGNNFSKWCYKPYDDLIKQAK 480
           E I+R+K GE   + +GW+GDNGDPDN+L   + C AV  G NF+++C    D LI   K
Sbjct: 410 ELIRRAKAGEHDLLFMGWAGDNGDPDNFLTPQFSCAAVKSGTNFARYCDPALDKLISAGK 469

Query: 481 ATSDQAKRTELYQKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKISPFALNSFYGVSV 539
            TS+Q  R++LYQ+AQ  +++Q    P+AH T +      V+ +++SPF    F  VSV
Sbjct: 470 TTSEQGVRSKLYQQAQAQIQQQALWLPLAHPTAFALARKNVEGYQVSPFGRQDFSKVSV 528