Pairwise Alignments

Query, 530 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 532 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  439 bits (1128), Expect = e-127
 Identities = 233/528 (44%), Positives = 325/528 (61%), Gaps = 7/528 (1%)

Query: 7   LSALLALGLVSQSPVLLANNLVFCSEGSPAGFDTAQYTSATDNDAA-EPIYNRLVEFERG 65
           L A +A  L+S +  + A  LV C+E SP GFD   YT+A   DAA E ++NRLV+F+ G
Sbjct: 6   LQAAMAAALLSVAIGVSAKPLVVCTEASPEGFDPVLYTTAVTADAAAETMFNRLVDFKPG 65

Query: 66  GTAVHPALATHW-EVSDNGLRYTFHLREGVRFHSNKAFSPSRTFNADDVLFTFNRMLDKG 124
            T V PALA    E+S +GL YTFHLR+ ++FH+   F P+R  NADDVL++F R LD  
Sbjct: 66  TTEVVPALAKDLPEISADGLTYTFHLRDDIKFHTTDYFKPTRNMNADDVLWSFQRQLDPN 125

Query: 125 HRFRQAYPTEFPYFNGMGLDKNIARVEKTDPLTVVFTLNTVDAAFIQNLAMSFASILSAE 184
           H + +     +PYF  MG  + +  VEKTD  TVVFTL   +A F+ +L M+F+SI S E
Sbjct: 126 HPWHKKSLVGYPYFESMGFKELLKSVEKTDDHTVVFTLTRPEAPFLADLGMAFSSIHSKE 185

Query: 185 YAEQLLASGRPSDINQQPIGTGPFVFQRYQKDSQIRYKGNKDYWAANEVKIDNLVFSINT 244
           YA+QLL SG+  D+N +PIGTGPFVF RYQKD+Q R+K N DY+      +D L+ +I+T
Sbjct: 186 YADQLLKSGKTEDLNAKPIGTGPFVFTRYQKDAQARFKANPDYFRGKPA-VDPLILAIST 244

Query: 245 DPSVRIQKLRRNECQVTLHPRPADLPALKADSTLQVLQQPGFNLGYIAYNTQHPPFDRLE 304
           D +VR+QKL+ NECQ+ L P+P D+P++K D  L+V +       Y A NT H       
Sbjct: 245 DNNVRLQKLKANECQIALFPKPDDIPSIKKDPNLKVDELAAMTTSYTALNTTHKYMSDAR 304

Query: 305 VRQAMDMAVNKEAILQAVYQDAGQRAVNA--MPPTQWSYDDSIKDAPYAPEKARQLIQQA 362
           VR A+++A +K    +A++   G   V     PPT   +++ +K+ P   +KAR L+++A
Sbjct: 305 VRHAINIAFDKAGYTEALF-GKGNAVVGTGPYPPTLLGFNEKLKNPPRDLDKARALLKEA 363

Query: 363 GVKPGTEITLWAMPVQRPYNPNAKLMAEMLQADWSKLGFKVRIVSYEWGEYLKRMKNGEH 422
           GV  GTE TL+      P NPN  L A+ +QAD +++G KV I   EWGE LKR KNGEH
Sbjct: 364 GVPEGTEFTLFTRNGGGPTNPNPMLGAQRMQADLAQIGLKVNIKVMEWGEMLKRAKNGEH 423

Query: 423 DIALIGWTGDNGDPDNWLGTLYSCDAI-GSNNYSQWCDPQYDSLVKQAKQVTDRTQRTAL 481
           D+   GW GDNGDPDN+L    SCDA     NY++WC+ ++  L+ +A+ + +  QR AL
Sbjct: 424 DMVSAGWVGDNGDPDNFLTPNLSCDAAKNGENYARWCNKEFQDLIDKARAIAEPAQRAAL 483

Query: 482 YQQAQQRLKQQVPITPVAHSIVSQPLSVKVSQFKVSPFGRNDFSGVSV 529
           Y+QAQ    +  P  P+A+  +   +   V  F  SP G N+F+   V
Sbjct: 484 YEQAQDVFDKDQPWLPMAYPKLFTAMRKNVEGFTQSPLGTNNFATTQV 531