Pairwise Alignments

Query, 530 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  506 bits (1303), Expect = e-148
 Identities = 255/530 (48%), Positives = 346/530 (65%), Gaps = 12/530 (2%)

Query: 5   TCLSAL-LALGLVSQSPVLLANNLVFCSEGSPAGFDTAQYTSATDNDAAEPIYNRLVEFE 63
           T ++AL LA G VS      A  LV+CSEGSP  F     T+ T  D    +YN +VEFE
Sbjct: 20  TAIAALTLACGAVS------AKTLVYCSEGSPENFYPGMNTTGTSFDVTTQVYNTIVEFE 73

Query: 64  RGGTAVHPALATHWEVSDNGLRYTFHLREGVRFHS-NKAFSPSRTFNADDVLFTFNRMLD 122
           RGGT V P LA  W++S +G  YTFHLR+GV++H+ +K+F P+R FNADD +F   R   
Sbjct: 74  RGGTKVVPGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFIFMLERQWK 133

Query: 123 KGHRFRQAYPTEFPYFNGMGLDKNIARVEKTDPLTVVFTLNTVDAAFIQNLAMSFASILS 182
           +   F +       YFN MG+ K +  V++ D  TV   LN  +A F+ NLAM +A I S
Sbjct: 134 ESDPFFKVTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLAMQYAGIQS 193

Query: 183 AEYAEQLLASGRPSDINQQPIGTGPFVFQRYQKDSQIRYKGNKDYWAANEVKIDNLVFSI 242
            EYA  +L +G P  ++Q PIGTGPF   +YQKD+ IR+K    YW   + KID+LVF+I
Sbjct: 194 KEYAIAMLKAGTPEKVDQDPIGTGPFYLVQYQKDAVIRFKAFPQYWGG-KAKIDDLVFAI 252

Query: 243 NTDPSVRIQKLRRNECQVTLHPRPADLPALKADSTLQVLQQPGFNLGYIAYNTQHPPFDR 302
             D SVR  KL++ EC V  +P PADL A++ D  +QVL+QPG N+GY++YNT   PFD 
Sbjct: 253 TPDASVRWAKLQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYLSYNTTKKPFDD 312

Query: 303 LEVRQAMDMAVNKEAILQAVYQDAGQRAVNAMPPTQWSYDDSIKDAPYAPEKARQLIQQA 362
           + VR+A++MA+NK+AI+  VY   G  A N +PPT WSY+D++KD PY PE A++L+ QA
Sbjct: 313 VRVRKAINMAINKKAIIDGVYLTTGVAAKNPIPPTMWSYNDAVKDDPYDPEAAKKLLAQA 372

Query: 363 GVKPGTEITLWAMPVQRPYNPNAKLMAEMLQADWSKLGFKVRIVSYEWGEYLKRMKNGEH 422
           G   G    LWAMPVQRPYNPNAK +AE++QAD +K+  K  I S+EWGEY KR++ GEH
Sbjct: 373 GYPDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAEIKSFEWGEYRKRLQAGEH 432

Query: 423 DIALIGWTGDNGDPDNWLGTLYSCDAIGS---NNYSQWCDPQYDSLVKQAKQVTDRTQRT 479
            + ++GWTGDNGDPDN+L TL  C +  S   +N S++C   Y+ LV +AK    +  R 
Sbjct: 433 QMGMLGWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQPYEDLVVKAKSTVKQADRD 492

Query: 480 ALYQQAQQRLKQQVPITPVAHSIVSQPLSVKVSQFKVSPFGRNDFSGVSV 529
           ALY++AQ   K+Q P   +AH++  +P+  +V  FK+SPFGR+ F GV +
Sbjct: 493 ALYKKAQVIFKEQAPWFTIAHAVQLKPVRKEVVDFKLSPFGRHTFYGVDI 542