Pairwise Alignments

Query, 530 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 504 a.a., ABC transporter substrate-binding protein from Dickeya dianthicola ME23

 Score =  172 bits (435), Expect = 3e-47
 Identities = 143/527 (27%), Positives = 235/527 (44%), Gaps = 44/527 (8%)

Query: 2   RHVTCLSALLALGLVSQSPVLLANNLVFCSEGSPAGFDTAQYTSATDNDAAEPIYNRLVE 61
           R+V     LLAL LVS+     A  L          FD  +     DN     +++ L+ 
Sbjct: 6   RNVAAAGVLLALSLVSEL-AQAAGILTIGRREDSTTFDPIKSAQNADNWVFSNVFDVLIR 64

Query: 62  FERGGTAVHPALATHWEVSDNGLRYTFHLREGVRFHSNKAFSPSRTFNADDVLFTFNRML 121
            ++ GT + P LA HW VS +G  YTF LRE         FS      A D +F+ +R+ 
Sbjct: 65  VDKTGTTLEPGLAQHWTVSPDGKVYTFTLREA-------RFSDGSPVTAQDAVFSLSRIR 117

Query: 122 D-KGHRFRQAYPTEFPYFNGMGLDKNIARVEKTDPLTVVFTLNTVDAAFIQNLAMSFASI 180
           D K   +R +Y               I  +   D  T+V TL +  A F+  LA+  AS+
Sbjct: 118 DSKESLWRDSYSI-------------IDTLAAPDAHTLVVTLKSPSAPFLSQLALPNASV 164

Query: 181 LSAEYAEQLLASGRPSDINQQPIGTGPFVFQRYQKDSQIRYKGNKDYWAANEVKIDNLVF 240
           L      +L          ++P+G+G FV Q + +  +I    N  YW A+ V +D + +
Sbjct: 165 LPENIVHRL----GEETFAEKPVGSGAFVIQSWARGDKIVLTKNPYYWQADHVSLDGVEW 220

Query: 241 SINTDPSVRIQKLRRNECQVTLHPRPADLPALKADSTLQVLQQPGFNLGYIAYNTQHPPF 300
               D + R+ K++  E    L    + L +L+ D  L+V Q P     ++  N  H   
Sbjct: 221 QTIPDDNTRMLKVQAGELDAALSVPFSRLASLQKDPNLKVTQDPSTREDHLLINHAHGLL 280

Query: 301 DRLEVRQAMDMAVNKEAILQAVYQDAGQRAVNAMPP-TQWSYDDSIKDAPYAPEKARQLI 359
            ++EVRQA+D A++K AI++ V  + G  A + +P    + Y D+++  PY PEKA+Q++
Sbjct: 281 GKVEVRQALDYAIDKSAIVKTVTFNYGTVANSYLPKGALYFYADNLQ-RPYDPEKAKQML 339

Query: 360 QQAGVKPGTEITLWAMPVQRPYNPNA-----KLMAEMLQADWSKLGFKVRIVSYEWGEYL 414
           + AG          A  +   Y  NA     + +A +LQ   +K G  V +   +  +  
Sbjct: 340 KAAG----------ASGLTLNYVVNAGDEVDEQIAVLLQQQLAKAGVAVNLQKVDPSQNW 389

Query: 415 KRMKNGEHDIALIGWTGDNGDPDNWLGTLYSCDAIGSNNYSQWCDPQYDSLVKQAKQVTD 474
             +  G+ D+++  WT D  DPD     +   D+   N  +++ + +  +LV  A+   D
Sbjct: 390 SMLVAGDFDLSVNYWTNDILDPDQKTTFVLGHDS-NMNYMTRYQNDKVKALVAAARVEMD 448

Query: 475 RTQRTALYQQAQQRLKQQVPITPVAHSIVSQPLSVKVSQFKVSPFGR 521
             +R  +Y   Q+  K  V    + +S         +S F  +P GR
Sbjct: 449 PKKREQMYIDLQKMAKDDVNWIDLYYSPYRNVTRKNISGFYQNPLGR 495